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PICST_42190 hypothetical protein [ Scheffersomyces stipitis CBS 6054 ]

Gene ID: 4837618, updated on 21-Dec-2023

Summary

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Gene symbol
PICST_42190
Gene description
hypothetical protein
Locus tag
PICST_42190
Gene type
protein coding
RNA name
predicted protein
RefSeq status
PROVISIONAL
Organism
Scheffersomyces stipitis CBS 6054 (strain: CBS 6054)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Scheffersomyces
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Genomic context

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See PICST_42190 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
1
Sequence:
Chromosome: 2; NC_009042.1 (2098985..2099806, complement)

Chromosome 2 - NC_009042.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene chromatin remodeling complex Adenosinetriphosphatase Neighboring gene subunit of N- oligosaccharyltransferase complex Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009042.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis. Jeffries TW, et al. Nat Biotechnol, 2007 Mar. PMID 17334359

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables uracil DNA N-glycosylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in base-excision repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in base-excision repair, AP site formation via deaminated base removal IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_009042.1 Reference assembly

    Range
    2098985..2099806 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001383131.1 → XP_001383168.2  predicted protein, partial [Scheffersomyces stipitis CBS 6054]

    See identical proteins and their annotated locations for XP_001383168.2

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A3LQ24
    Conserved Domains (1) summary
    PRK05254
    Location:21 → 264
    PRK05254; uracil-DNA glycosylase; Provisional
Nucleotide Protein
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