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LUM lumican [ Canis lupus familiaris (dog) ]

Gene ID: 482599, updated on 17-Aug-2024

Summary

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Official Symbol
LUMprovided by VGNC
Official Full Name
lumicanprovided by VGNC
Primary source
VGNC:VGNC:42865
See related
Ensembl:ENSCAFG00845019701
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 15
Exon count:
3
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 15 NC_051819.1 (32449009..32456782, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 15 NC_006597.4 (32247441..32254994, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 15 NC_049236.1 (32098606..32106158, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 15 NC_049275.1 (31741534..31749085, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 15 NC_049756.1 (31805190..31812738, complement)

Chromosome 15 - NC_051819.1Genomic Context describing neighboring genes Neighboring gene epiphycan Neighboring gene keratocan Neighboring gene decorin Neighboring gene ATP synthase subunit d, mitochondrial-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lumican

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051819.1 Reference ROS_Cfam_1.0

    Range
    32449009..32456782 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038688219.1 → XP_038544147.1  lumican

    UniProtKB/TrEMBL
    A0A8C0R610, A0A8C0SV20, A0A8I3P684
    Related
    ENSCAFP00845027197.1, ENSCAFT00845034726.1
    Conserved Domains (3) summary
    smart00013
    Location:37 → 71
    LRRNT; Leucine rich repeat N-terminal domain
    sd00033
    Location:68 → 91
    LRR_RI; leucine-rich repeat [structural motif]
    NF033190
    Location:68 → 310
    inl_like_NEAT_1; NEAT domain-containing leucine-rich repeat protein

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049275.1 Alternate UMICH_Zoey_3.1

    Range
    31741534..31749085 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038496246.1 → XP_038352174.1  lumican

    Conserved Domains (3) summary
    smart00013
    Location:37 → 71
    LRRNT; Leucine rich repeat N-terminal domain
    sd00033
    Location:68 → 91
    LRR_RI; leucine-rich repeat [structural motif]
    NF033190
    Location:68 → 310
    inl_like_NEAT_1; NEAT domain-containing leucine-rich repeat protein

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049756.1 Alternate UNSW_CanFamBas_1.0

    Range
    31805190..31812738 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038622533.1 → XP_038478461.1  lumican

    Conserved Domains (3) summary
    smart00013
    Location:37 → 71
    LRRNT; Leucine rich repeat N-terminal domain
    sd00033
    Location:68 → 91
    LRR_RI; leucine-rich repeat [structural motif]
    NF033190
    Location:68 → 310
    inl_like_NEAT_1; NEAT domain-containing leucine-rich repeat protein

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049236.1 Alternate UU_Cfam_GSD_1.0

    Range
    32098606..32106158 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038558633.1 → XP_038414561.1  lumican

    UniProtKB/TrEMBL
    A0A8C0R610, A0A8C0SV20, A0A8I3P684
    Conserved Domains (3) summary
    smart00013
    Location:37 → 71
    LRRNT; Leucine rich repeat N-terminal domain
    sd00033
    Location:68 → 91
    LRR_RI; leucine-rich repeat [structural motif]
    NF033190
    Location:68 → 310
    inl_like_NEAT_1; NEAT domain-containing leucine-rich repeat protein

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006597.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    32247441..32254994 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_539716.7 → XP_539716.1  lumican

    UniProtKB/TrEMBL
    A0A8C0R610, A0A8C0SV20, A0A8I3P684
    Conserved Domains (3) summary
    smart00013
    Location:37 → 71
    LRRNT; Leucine rich repeat N-terminal domain
    sd00033
    Location:68 → 91
    LRR_RI; leucine-rich repeat [structural motif]
    NF033190
    Location:68 → 310
    inl_like_NEAT_1; NEAT domain-containing leucine-rich repeat protein
Nucleotide Protein
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