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LOC4817549 excitatory amino acid transporter [ Drosophila pseudoobscura ]

Gene ID: 4817549, updated on 14-May-2024

Summary

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Gene symbol
LOC4817549
Gene description
excitatory amino acid transporter
See related
EnsemblRapid:LOC4817549
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila pseudoobscura
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Orthologs
fruit fly all
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Genomic context

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Location:
chromosome: 4
Exon count:
8
Annotation release Status Assembly Chr Location
104 current UCI_Dpse_MV25 (GCF_009870125.1) 4 NC_046681.1 (26867386..26873906)

Chromosome 4 - NC_046681.1Genomic Context describing neighboring genes Neighboring gene bromodomain-containing protein DDB_G0270170 Neighboring gene gamma-aminobutyric acid type B receptor subunit 2 Neighboring gene protein dachsous Neighboring gene cyclin-Y-like protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_046681.1 Chromosome 4 Reference UCI_Dpse_MV25 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evaluation of different reference based annotation strategies using RNA-Seq - a case study in Drososphila pseudoobscura. Palmieri N, et al. PLoS One, 2012. PMID 23056304, Free PMC Article
  2. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-glutamate transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glutamate:sodium symporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables neutral L-amino acid transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in L-glutamate transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
excitatory amino acid transporter

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila pseudoobscura Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCI_Dpse_MV25 Primary Assembly

Genomic

  1. NC_046681.1 Reference UCI_Dpse_MV25 Primary Assembly

    Range
    26867386..26873906
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015180841.2 → XP_015036327.1  excitatory amino acid transporter isoform X2

    UniProtKB/TrEMBL
    A0A0R3NT53, A0A6I8V9Z4
    Related
    XP_015036327.1, XM_015180841.2
    Conserved Domains (1) summary
    pfam00375
    Location:41 → 488
    SDF; Sodium:dicarboxylate symporter family

  2. XM_001356921.4 → XP_001356957.2  excitatory amino acid transporter isoform X1

    UniProtKB/TrEMBL
    A0A6I8UKG3, Q29LM2
    Related
    XP_001356957.2, XM_001356921.4
    Conserved Domains (1) summary
    pfam00375
    Location:55 → 502
    SDF; Sodium:dicarboxylate symporter family
Nucleotide Protein Strain
Heading Accession and Version

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