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run segmentation protein runt [ Drosophila pseudoobscura ]

Gene ID: 4815174, updated on 13-May-2024

Summary

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Gene symbol
run
Gene description
segmentation protein runt
See related
EnsemblRapid:LOC4815174
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila pseudoobscura
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Orthologs
fruit fly all
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Genomic context

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See run in Genome Data Viewer
Location:
chromosome: X
Exon count:
2
Annotation release Status Assembly Chr Location
104 current UCI_Dpse_MV25 (GCF_009870125.1) X NC_046683.1 (8819680..8822514, complement)

Chromosome X - NC_046683.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC6901659 Neighboring gene uncharacterized LOC6901657 Neighboring gene probable cytochrome P450 6v1 Neighboring gene uncharacterized LOC117184992

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_046683.1 Chromosome X Reference UCI_Dpse_MV25 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolutionary history of microsatellites in the obscura group of Drosophila. Noor MA, et al. Mol Biol Evol, 2001 Apr. PMID 11264406
  2. Conservation and function of the transcriptional regulatory protein Runt. Pepling ME, et al. Proc Natl Acad Sci U S A, 1995 Sep 26. PMID 7568078, Free PMC Article
  3. Microsatellite variation in populations of Drosophila pseudoobscura and Drosophila persimilis. Noor MA, et al. Genet Res, 2000 Feb. PMID 10740918
  4. Distinct contributions of conserved modules to Runt transcription factor activity. Walrad PB, et al. Mol Biol Cell, 2010 Jul 1. PMID 20462957, Free PMC Article
  5. A survey of chromosomal and nucleotide sequence variation in Drosophila miranda. Yi S, et al. Genetics, 2003 Aug. PMID 12930746, Free PMC Article

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
segmentation protein Runt

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila pseudoobscura Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCI_Dpse_MV25 Primary Assembly

Genomic

  1. NC_046683.1 Reference UCI_Dpse_MV25 Primary Assembly

    Range
    8819680..8822514 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015186451.2 → XP_015041937.2  segmentation protein Runt isoform X2

    UniProtKB/TrEMBL
    A0A6I8VIC1, Q24612
    Related
    XP_015041937.2, XM_015186451.2
    Conserved Domains (1) summary
    pfam00853
    Location:124 → 248
    Runt; Runt domain

  2. XM_001355007.4 → XP_001355043.3  segmentation protein Runt isoform X1

    UniProtKB/TrEMBL
    A0A6I8UGB3, Q24612
    Related
    XP_001355043.3, XM_001355007.4
    Conserved Domains (1) summary
    pfam00853
    Location:124 → 250
    Runt; Runt domain
Nucleotide Protein Strain
Heading Accession and Version

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