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Msh6 DNA mismatch repair protein Msh6 [ Drosophila pseudoobscura ]

Gene ID: 4813691, updated on 16-May-2024

Summary

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Gene symbol
Msh6
Gene description
DNA mismatch repair protein Msh6
See related
EnsemblRapid:LOC4813691
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila pseudoobscura
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Orthologs
fruit fly all
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Genomic context

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See Msh6 in Genome Data Viewer
Location:
chromosome: X
Exon count:
5
Annotation release Status Assembly Chr Location
104 current UCI_Dpse_MV25 (GCF_009870125.1) X NC_046683.1 (43083094..43087710)

Chromosome X - NC_046683.1Genomic Context describing neighboring genes Neighboring gene endoplasmic reticulum-Golgi intermediate compartment protein 3 Neighboring gene reactive oxygen species modulator 1 Neighboring gene pre-mRNA processing factor 31 Neighboring gene glycoprotein 3-alpha-L-fucosyltransferase A Neighboring gene peroxisomal biogenesis factor 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_046683.1 Chromosome X Reference UCI_Dpse_MV25 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent DNA damage sensor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mismatched DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mismatch repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of MutSalpha complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable DNA mismatch repair protein Msh6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila pseudoobscura Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCI_Dpse_MV25 Primary Assembly

Genomic

  1. NC_046683.1 Reference UCI_Dpse_MV25 Primary Assembly

    Range
    43083094..43087710
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001353131.4 → XP_001353167.2  probable DNA mismatch repair protein Msh6

    UniProtKB/TrEMBL
    A0A6I8UC90
    Related
    XP_001353167.2, XM_001353131.4
    Conserved Domains (2) summary
    COG0249
    Location:258 → 1185
    MutS; DNA mismatch repair ATPase MutS [Replication, recombination and repair]
    pfam05793
    Location:19 → 155
    TFIIF_alpha; Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
Nucleotide Protein Strain
Heading Accession and Version

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