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sina seven in absentia [ Drosophila pseudoobscura ]

Gene ID: 4812315, updated on 23-May-2024

Summary

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Gene symbol
sina
Gene description
seven in absentia
See related
EnsemblRapid:LOC4812315
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila pseudoobscura
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Orthologs
fruit fly all
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Genomic context

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See sina in Genome Data Viewer
Location:
chromosome: X
Exon count:
2
Annotation release Status Assembly Chr Location
104 current UCI_Dpse_MV25 (GCF_009870125.1) X NC_046683.1 (64561010..64565012, complement)

Chromosome X - NC_046683.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain-containing protein 22 homolog Neighboring gene opsin Rh4 Neighboring gene probable E3 ubiquitin-protein ligase sinah Neighboring gene Zinc finger CCHC-type containing 7 Neighboring gene tumor susceptibility gene 101 Neighboring gene oligosaccharyltransferase subunit 5 kud

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_046683.1 Chromosome X Reference UCI_Dpse_MV25 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin conjugating enzyme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase sina

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila pseudoobscura Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCI_Dpse_MV25 Primary Assembly

Genomic

  1. NC_046683.1 Reference UCI_Dpse_MV25 Primary Assembly

    Range
    64561010..64565012 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001352776.4 → XP_001352812.2  E3 ubiquitin-protein ligase sina

    See identical proteins and their annotated locations for XP_001352812.2

    UniProtKB/TrEMBL
    A0A6I8UBI7, Q29DV1
    Related
    XP_001352812.2, XM_001352776.4
    Conserved Domains (3) summary
    cd00162
    Location:73 → 107
    RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
    pfam03145
    Location:114 → 310
    Sina; Seven in absentia protein family
    cl17238
    Location:71 → 110
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

  2. XM_015188381.2 → XP_015043867.1  E3 ubiquitin-protein ligase sina

    UniProtKB/TrEMBL
    A0A6I8UBI7, Q29DV1
    Related
    XP_015043867.1, XM_015188381.2
    Conserved Domains (3) summary
    cd00162
    Location:73 → 107
    RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
    pfam03145
    Location:114 → 310
    Sina; Seven in absentia protein family
    cl17238
    Location:71 → 110
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
Nucleotide Protein Strain
Heading Accession and Version

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