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l(3)72Dn UTP4 small subunit processome component l(3)72Dn [ Drosophila pseudoobscura ]

Gene ID: 4812164, updated on 15-May-2024

Summary

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Gene symbol
l(3)72Dn
Gene description
UTP4 small subunit processome component l(3)72Dn
See related
EnsemblRapid:LOC4812164
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila pseudoobscura
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Orthologs
fruit fly all
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Genomic context

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Location:
chromosome: X
Exon count:
3
Annotation release Status Assembly Chr Location
104 current UCI_Dpse_MV25 (GCF_009870125.1) X NC_046683.1 (58240537..58243033, complement)

Chromosome X - NC_046683.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC6900000 Neighboring gene homeotic protein female sterile Neighboring gene Thioredoxin-related transmembrane protein 3 Neighboring gene programmed cell death 5 Neighboring gene mediator complex subunit 10

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_046683.1 Chromosome X Reference UCI_Dpse_MV25 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 90S preribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of small-subunit processome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of t-UTP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
U3 small nucleolar RNA-associated protein 4 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila pseudoobscura Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCI_Dpse_MV25 Primary Assembly

Genomic

  1. NC_046683.1 Reference UCI_Dpse_MV25 Primary Assembly

    Range
    58240537..58243033 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001352500.4 → XP_001352536.2  U3 small nucleolar RNA-associated protein 4 homolog

    UniProtKB/TrEMBL
    A0A6I8UAS7
    Related
    XP_001352536.2, XM_001352500.4
    Conserved Domains (3) summary
    COG2319
    Location:21 → 317
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:115 → 154
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:292 → 577
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein Strain
Heading Accession and Version

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