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Taf3 TBP-associated factor 3 [ Drosophila pseudoobscura ]

Gene ID: 4811748, updated on 23-May-2024

Summary

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Gene symbol
Taf3
Gene description
TBP-associated factor 3
See related
EnsemblRapid:LOC4811748
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila pseudoobscura
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Orthologs
fruit fly all
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Genomic context

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See Taf3 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
8
Annotation release Status Assembly Chr Location
104 current UCI_Dpse_MV25 (GCF_009870125.1) 5 NC_046682.1 (1368370..1374135)

Chromosome 5 - NC_046682.1Genomic Context describing neighboring genes Neighboring gene tau-tubulin kinase homolog Asator Neighboring gene uncharacterized LOC117184337 Neighboring gene Calcium/calmodulin-dependent protein kinase I Neighboring gene uncharacterized LOC117184339 Neighboring gene Eph receptor tyrosine kinase Neighboring gene uncharacterized LOC117184338

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_046682.1 Chromosome 5 Reference UCI_Dpse_MV25 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evaluation of different reference based annotation strategies using RNA-Seq - a case study in Drososphila pseudoobscura. Palmieri N, et al. PLoS One, 2012. PMID 23056304, Free PMC Article
  2. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of transcription factor TFIID complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription initiation factor TFIID subunit 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila pseudoobscura Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCI_Dpse_MV25 Primary Assembly

Genomic

  1. NC_046682.1 Reference UCI_Dpse_MV25 Primary Assembly

    Range
    1368370..1374135
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001352283.4 → XP_001352319.3  transcription initiation factor TFIID subunit 3 isoform X1

    UniProtKB/TrEMBL
    A0A0R3NVH6, A0A6I8UAB9, Q29CQ0
    Related
    XP_001352319.3, XM_001352283.4
    Conserved Domains (2) summary
    smart00576
    Location:3 → 79
    BTP; Bromodomain transcription factors and PHD domain containing proteins
    cd15522
    Location:1446 → 1491
    PHD_TAF3; PHD finger found in transcription initiation factor TFIID subunit 3 (TAF3)

  2. XM_015188748.2 → XP_015044234.1  transcription initiation factor TFIID subunit 3 isoform X2

    UniProtKB/TrEMBL
    A0A0R3NVH6, A0A0R3P0H2, A0A6I8VM78
    Related
    XP_015044234.1, XM_015188748.2
    Conserved Domains (2) summary
    smart00576
    Location:3 → 79
    BTP; Bromodomain transcription factors and PHD domain containing proteins
    cd15522
    Location:1444 → 1489
    PHD_TAF3; PHD finger found in transcription initiation factor TFIID subunit 3 (TAF3)

  3. XM_015188749.2 → XP_015044235.1  transcription initiation factor TFIID subunit 3 isoform X3

    UniProtKB/TrEMBL
    A0A0R3NVH6, A0A0R3P1K7, A0A6I8VMA6
    Related
    XP_015044235.1, XM_015188749.2
    Conserved Domains (2) summary
    smart00576
    Location:3 → 79
    BTP; Bromodomain transcription factors and PHD domain containing proteins
    cd15522
    Location:1301 → 1346
    PHD_TAF3; PHD finger found in transcription initiation factor TFIID subunit 3 (TAF3)
Nucleotide Protein Strain
Heading Accession and Version

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