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LOC4804232 potassium channel subfamily T member 2 [ Drosophila pseudoobscura ]

Gene ID: 4804232, updated on 10-May-2024

Summary

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Gene symbol
LOC4804232
Gene description
potassium channel subfamily T member 2
See related
EnsemblRapid:LOC4804232
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila pseudoobscura
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Orthologs
fruit fly all
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Genomic context

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See LOC4804232 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
36
Annotation release Status Assembly Chr Location
104 current UCI_Dpse_MV25 (GCF_009870125.1) 3 NC_046680.1 (10892329..10984572)

Chromosome 3 - NC_046680.1Genomic Context describing neighboring genes Neighboring gene peroxisomal (S)-2-hydroxy-acid oxidase GLO5 Neighboring gene peroxiredoxin-6 Neighboring gene uncharacterized LOC6898420 Neighboring gene uncharacterized LOC6898421 Neighboring gene uncharacterized LOC4804225 Neighboring gene uncharacterized LOC117183734 Neighboring gene uncharacterized LOC26532756 Neighboring gene 101 kDa malaria antigen Neighboring gene uncharacterized LOC117183733 Neighboring gene uncharacterized LOC6898423 Neighboring gene nidogen Neighboring gene uncharacterized LOC26532494 Neighboring gene Odorant-binding protein 46a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_046680.1 Chromosome 3 Reference UCI_Dpse_MV25 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evaluation of different reference based annotation strategies using RNA-Seq - a case study in Drososphila pseudoobscura. Palmieri N, et al. PLoS One, 2012. PMID 23056304, Free PMC Article
  2. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables intracellular sodium-activated potassium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in potassium ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
potassium channel subfamily T member 1; potassium channel subfamily T member 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila pseudoobscura Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCI_Dpse_MV25 Primary Assembly

Genomic

  1. NC_046680.1 Reference UCI_Dpse_MV25 Primary Assembly

    Range
    10892329..10984572
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001360787.4 → XP_001360824.4  potassium channel subfamily T member 1 isoform X18

    UniProtKB/TrEMBL
    A0A6I8UTX1
    Related
    XP_001360824.4, XM_001360787.4
    Conserved Domains (2) summary
    pfam03493
    Location:450 → 552
    BK_channel_a; Calcium-activated BK potassium channel alpha subunit
    pfam07885
    Location:254 → 296
    Ion_trans_2; Ion channel

  2. XM_033378702.1 → XP_033234593.1  potassium channel subfamily T member 1 isoform X22

    UniProtKB/TrEMBL
    A0A6I8VUI9
    Related
    XP_033234593.1, XM_033378702.1
    Conserved Domains (2) summary
    pfam03493
    Location:450 → 552
    BK_channel_a; Calcium-activated BK potassium channel alpha subunit
    pfam07885
    Location:254 → 296
    Ion_trans_2; Ion channel

  3. XM_033378693.1 → XP_033234584.1  potassium channel subfamily T member 2 isoform X12

    UniProtKB/TrEMBL
    A0A6I8VVH2
    Related
    XP_033234584.1, XM_033378693.1
    Conserved Domains (2) summary
    pfam03493
    Location:505 → 607
    BK_channel_a; Calcium-activated BK potassium channel alpha subunit
    pfam07885
    Location:309 → 351
    Ion_trans_2; Ion channel

  4. XM_033378698.1 → XP_033234589.1  potassium channel subfamily T member 2 isoform X17

    UniProtKB/TrEMBL
    A0A6I8VVH8
    Related
    XP_033234589.1, XM_033378698.1
    Conserved Domains (2) summary
    pfam03493
    Location:505 → 607
    BK_channel_a; Calcium-activated BK potassium channel alpha subunit
    pfam07885
    Location:309 → 351
    Ion_trans_2; Ion channel

  5. XM_033378701.1 → XP_033234592.1  potassium channel subfamily T member 2 isoform X21

    UniProtKB/TrEMBL
    A0A6I8VU45
    Related
    XP_033234592.1, XM_033378701.1
    Conserved Domains (2) summary
    pfam03493
    Location:505 → 607
    BK_channel_a; Calcium-activated BK potassium channel alpha subunit
    pfam07885
    Location:309 → 351
    Ion_trans_2; Ion channel

  6. XM_033378691.1 → XP_033234582.1  potassium channel subfamily T member 2 isoform X10

    UniProtKB/TrEMBL
    A0A6I8VU31
    Related
    XP_033234582.1, XM_033378691.1
    Conserved Domains (2) summary
    pfam03493
    Location:525 → 627
    BK_channel_a; Calcium-activated BK potassium channel alpha subunit
    pfam07885
    Location:329 → 371
    Ion_trans_2; Ion channel

  7. XM_033378694.1 → XP_033234585.1  potassium channel subfamily T member 2 isoform X13

    UniProtKB/TrEMBL
    A0A6I8VU38
    Related
    XP_033234585.1, XM_033378694.1
    Conserved Domains (2) summary
    pfam03493
    Location:500 → 602
    BK_channel_a; Calcium-activated BK potassium channel alpha subunit
    pfam07885
    Location:304 → 346
    Ion_trans_2; Ion channel

  8. XM_033378697.1 → XP_033234588.1  potassium channel subfamily T member 1 isoform X16

    UniProtKB/TrEMBL
    A0A6I8VUI2
    Related
    XP_033234588.1, XM_033378697.1
    Conserved Domains (2) summary
    pfam03493
    Location:525 → 627
    BK_channel_a; Calcium-activated BK potassium channel alpha subunit
    pfam07885
    Location:329 → 371
    Ion_trans_2; Ion channel

  9. XM_033378699.1 → XP_033234590.1  potassium channel subfamily T member 2 isoform X19

    UniProtKB/TrEMBL
    A0A6I8VU43
    Related
    XP_033234590.1, XM_033378699.1
    Conserved Domains (2) summary
    pfam03493
    Location:582 → 684
    BK_channel_a; Calcium-activated BK potassium channel alpha subunit
    pfam07885
    Location:386 → 428
    Ion_trans_2; Ion channel

  10. XM_033378683.1 → XP_033234574.1  potassium channel subfamily T member 2 isoform X2

    UniProtKB/TrEMBL
    A0A6I8VVD2
    Related
    XP_033234574.1, XM_033378683.1
    Conserved Domains (2) summary
    pfam03493
    Location:582 → 684
    BK_channel_a; Calcium-activated BK potassium channel alpha subunit
    pfam07885
    Location:386 → 428
    Ion_trans_2; Ion channel

  11. XM_033378684.1 → XP_033234575.1  potassium channel subfamily T member 2 isoform X3

    UniProtKB/TrEMBL
    A0A6I8VU27
    Related
    XP_033234575.1, XM_033378684.1
    Conserved Domains (2) summary
    pfam03493
    Location:582 → 684
    BK_channel_a; Calcium-activated BK potassium channel alpha subunit
    pfam07885
    Location:386 → 428
    Ion_trans_2; Ion channel

  12. XM_033378682.1 → XP_033234573.1  potassium channel subfamily T member 2 isoform X1

    UniProtKB/TrEMBL
    A0A6I8VUG8
    Related
    XP_033234573.1, XM_033378682.1
    Conserved Domains (2) summary
    pfam03493
    Location:582 → 684
    BK_channel_a; Calcium-activated BK potassium channel alpha subunit
    pfam07885
    Location:386 → 428
    Ion_trans_2; Ion channel

  13. XM_033378686.1 → XP_033234577.1  potassium channel subfamily T member 2 isoform X5

    UniProtKB/TrEMBL
    A0A6I8VU25
    Related
    XP_033234577.1, XM_033378686.1
    Conserved Domains (2) summary
    pfam03493
    Location:582 → 684
    BK_channel_a; Calcium-activated BK potassium channel alpha subunit
    pfam07885
    Location:386 → 428
    Ion_trans_2; Ion channel

  14. XM_033378687.1 → XP_033234578.1  potassium channel subfamily T member 2 isoform X6

    UniProtKB/TrEMBL
    A0A6I8VUH2
    Related
    XP_033234578.1, XM_033378687.1
    Conserved Domains (2) summary
    pfam03493
    Location:582 → 684
    BK_channel_a; Calcium-activated BK potassium channel alpha subunit
    pfam07885
    Location:386 → 428
    Ion_trans_2; Ion channel

  15. XM_033378685.1 → XP_033234576.1  potassium channel subfamily T member 2 isoform X4

    UniProtKB/TrEMBL
    A0A6I8VU24
    Related
    XP_033234576.1, XM_033378685.1
    Conserved Domains (2) summary
    pfam03493
    Location:582 → 684
    BK_channel_a; Calcium-activated BK potassium channel alpha subunit
    pfam07885
    Location:386 → 428
    Ion_trans_2; Ion channel

  16. XM_033378688.1 → XP_033234579.1  potassium channel subfamily T member 2 isoform X7

    UniProtKB/TrEMBL
    A0A6I8VVD7
    Related
    XP_033234579.1, XM_033378688.1
    Conserved Domains (2) summary
    pfam03493
    Location:582 → 684
    BK_channel_a; Calcium-activated BK potassium channel alpha subunit
    pfam07885
    Location:386 → 428
    Ion_trans_2; Ion channel

  17. XM_033378689.1 → XP_033234580.1  potassium channel subfamily T member 2 isoform X8

    UniProtKB/TrEMBL
    A0A6I8VU33
    Related
    XP_033234580.1, XM_033378689.1
    Conserved Domains (2) summary
    pfam03493
    Location:582 → 684
    BK_channel_a; Calcium-activated BK potassium channel alpha subunit
    pfam07885
    Location:386 → 428
    Ion_trans_2; Ion channel

  18. XM_033378690.1 → XP_033234581.1  potassium channel subfamily T member 1 isoform X9

    UniProtKB/TrEMBL
    A0A6I8VU28
    Related
    XP_033234581.1, XM_033378690.1
    Conserved Domains (2) summary
    pfam03493
    Location:582 → 684
    BK_channel_a; Calcium-activated BK potassium channel alpha subunit
    pfam07885
    Location:386 → 428
    Ion_trans_2; Ion channel

  19. XM_033378692.1 → XP_033234583.1  potassium channel subfamily T member 1 isoform X11

    UniProtKB/TrEMBL
    A0A6I8VUH7
    Related
    XP_033234583.1, XM_033378692.1
    Conserved Domains (2) summary
    pfam03493
    Location:582 → 684
    BK_channel_a; Calcium-activated BK potassium channel alpha subunit
    pfam07885
    Location:386 → 428
    Ion_trans_2; Ion channel

  20. XM_033378695.1 → XP_033234586.1  potassium channel subfamily T member 2 isoform X14

    UniProtKB/TrEMBL
    A0A6I8VU32
    Related
    XP_033234586.1, XM_033378695.1
    Conserved Domains (2) summary
    pfam03493
    Location:573 → 675
    BK_channel_a; Calcium-activated BK potassium channel alpha subunit
    pfam07885
    Location:377 → 419
    Ion_trans_2; Ion channel

  21. XM_033378696.1 → XP_033234587.1  potassium channel subfamily T member 1 isoform X15

    UniProtKB/TrEMBL
    A0A6I8VU36
    Related
    XP_033234587.1, XM_033378696.1
    Conserved Domains (2) summary
    pfam03493
    Location:454 → 556
    BK_channel_a; Calcium-activated BK potassium channel alpha subunit
    pfam07885
    Location:258 → 300
    Ion_trans_2; Ion channel

  22. XM_033378700.1 → XP_033234591.1  potassium channel subfamily T member 1 isoform X20

    UniProtKB/TrEMBL
    A0A6I8VU37
    Related
    XP_033234591.1, XM_033378700.1
    Conserved Domains (2) summary
    pfam03493
    Location:454 → 556
    BK_channel_a; Calcium-activated BK potassium channel alpha subunit
    pfam07885
    Location:258 → 300
    Ion_trans_2; Ion channel
Nucleotide Protein Strain
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