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LOC4803477 protein prickle [ Drosophila pseudoobscura ]

Gene ID: 4803477, updated on 10-May-2024

Summary

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Gene symbol
LOC4803477
Gene description
protein prickle
See related
EnsemblRapid:LOC4803477
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila pseudoobscura
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Orthologs
fruit fly all
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Genomic context

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See LOC4803477 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
9
Annotation release Status Assembly Chr Location
104 current UCI_Dpse_MV25 (GCF_009870125.1) 3 NC_046680.1 (4966792..5020419)

Chromosome 3 - NC_046680.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC6898105 Neighboring gene serine protease inhibitor 42Dd Neighboring gene uncharacterized LOC26532422 Neighboring gene serine protease inhibitor 42Dd Neighboring gene antichymotrypsin-2 Neighboring gene alaserpin Neighboring gene Odorant receptor 43a Neighboring gene Adenosine kinase 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_046680.1 Chromosome 3 Reference UCI_Dpse_MV25 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Subdivision of large introns in Drosophila by recursive splicing at nonexonic elements. Burnette JM, et al. Genetics, 2005 Jun. PMID 15802507, Free PMC Article
  2. Evaluation of different reference based annotation strategies using RNA-Seq - a case study in Drososphila pseudoobscura. Palmieri N, et al. PLoS One, 2012. PMID 23056304, Free PMC Article
  3. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein prickle

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila pseudoobscura Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCI_Dpse_MV25 Primary Assembly

Genomic

  1. NC_046680.1 Reference UCI_Dpse_MV25 Primary Assembly

    Range
    4966792..5020419
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001360158.4 → XP_001360195.4  protein prickle isoform X4

    UniProtKB/TrEMBL
    A0A6I8UT20
    Related
    XP_001360195.4, XM_001360158.4
    Conserved Domains (4) summary
    cd09415
    Location:294 → 352
    LIM1_Prickle; The first LIM domain of Prickle
    cd09418
    Location:357 → 412
    LIM2_Prickle; The second LIM domain of Prickle
    cd09420
    Location:417 → 475
    LIM3_Prickle; The third LIM domain of Prickle
    cd09827
    Location:193 → 288
    PET_Prickle; The PET domain of Prickle

  2. XM_015183611.2 → XP_015039097.2  protein prickle isoform X2

    UniProtKB/TrEMBL
    A0A6I8VDM3
    Related
    XP_015039097.2, XM_015183611.2
    Conserved Domains (4) summary
    cd09415
    Location:366 → 424
    LIM1_Prickle; The first LIM domain of Prickle
    cd09418
    Location:429 → 484
    LIM2_Prickle; The second LIM domain of Prickle
    cd09420
    Location:489 → 547
    LIM3_Prickle; The third LIM domain of Prickle
    cd09827
    Location:265 → 360
    PET_Prickle; The PET domain of Prickle

  3. XM_033378865.1 → XP_033234756.1  protein prickle isoform X1

    UniProtKB/Swiss-Prot
    Q292U2
    UniProtKB/TrEMBL
    A0A6I8VUK7
    Related
    XP_033234756.1, XM_033378865.1
    Conserved Domains (4) summary
    cd09415
    Location:673 → 731
    LIM1_Prickle; The first LIM domain of Prickle
    cd09418
    Location:736 → 791
    LIM2_Prickle; The second LIM domain of Prickle
    cd09420
    Location:796 → 854
    LIM3_Prickle; The third LIM domain of Prickle
    cd09827
    Location:572 → 667
    PET_Prickle; The PET domain of Prickle

  4. XM_015183612.2 → XP_015039098.2  protein prickle isoform X3

    UniProtKB/TrEMBL
    A0A6I8VDR2
    Related
    XP_015039098.2, XM_015183612.2
    Conserved Domains (4) summary
    cd09415
    Location:325 → 383
    LIM1_Prickle; The first LIM domain of Prickle
    cd09418
    Location:388 → 443
    LIM2_Prickle; The second LIM domain of Prickle
    cd09420
    Location:448 → 506
    LIM3_Prickle; The third LIM domain of Prickle
    cd09827
    Location:224 → 319
    PET_Prickle; The PET domain of Prickle
Nucleotide Protein Strain
Heading Accession and Version

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