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LOC4802004 RNA-binding protein squid [ Drosophila pseudoobscura ]

Gene ID: 4802004, updated on 10-May-2024

Summary

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Gene symbol
LOC4802004
Gene description
RNA-binding protein squid
See related
EnsemblRapid:LOC4802004
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila pseudoobscura
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Orthologs
fruit fly all
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Genomic context

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See LOC4802004 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
8
Annotation release Status Assembly Chr Location
104 current UCI_Dpse_MV25 (GCF_009870125.1) 2 NC_046679.1 (17263683..17273897, complement)

Chromosome 2 - NC_046679.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC117184061 Neighboring gene keratin-associated protein 19-2 Neighboring gene uncharacterized LOC4802003 Neighboring gene ras GTPase-activating protein-binding protein 2 Neighboring gene ribonucleoprotein RB97D

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_046679.1 Chromosome 2 Reference UCI_Dpse_MV25 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evaluation of different reference based annotation strategies using RNA-Seq - a case study in Drososphila pseudoobscura. Palmieri N, et al. PLoS One, 2012. PMID 23056304, Free PMC Article
  2. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA-binding protein squid

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila pseudoobscura Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCI_Dpse_MV25 Primary Assembly

Genomic

  1. NC_046679.1 Reference UCI_Dpse_MV25 Primary Assembly

    Range
    17263683..17273897 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033380080.1 → XP_033235971.1  RNA-binding protein squid isoform X1

    UniProtKB/TrEMBL
    A0A6I8VY02
    Related
    XP_033235971.1, XM_033380080.1
    Conserved Domains (2) summary
    cd12329
    Location:136 → 210
    RRM2_hnRNPD_like; RNA recognition motif 2 (RRM2) found in heterogeneous nuclear ribonucleoprotein hnRNP D0, hnRNP A/B, hnRNP DL and similar proteins
    cd12325
    Location:57 → 128
    RRM1_hnRNPA_hnRNPD_like; RNA recognition motif 1 (RRM1) found in heterogeneous nuclear ribonucleoprotein hnRNP A and hnRNP D subfamilies and similar proteins

  2. XM_001358975.5 → XP_001359012.4  RNA-binding protein squid isoform X2

    UniProtKB/TrEMBL
    A0A6I8UPX5
    Related
    XP_001359012.4, XM_001358975.5
    Conserved Domains (2) summary
    cd12329
    Location:136 → 210
    RRM2_hnRNPD_like; RNA recognition motif 2 (RRM2) found in heterogeneous nuclear ribonucleoprotein hnRNP D0, hnRNP A/B, hnRNP DL and similar proteins
    cd12325
    Location:57 → 128
    RRM1_hnRNPA_hnRNPD_like; RNA recognition motif 1 (RRM1) found in heterogeneous nuclear ribonucleoprotein hnRNP A and hnRNP D subfamilies and similar proteins
Nucleotide Protein Strain
Heading Accession and Version

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