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TRAPPC2L trafficking protein particle complex subunit 2L [ Canis lupus familiaris (dog) ]

Gene ID: 479614, updated on 5-Mar-2024

Summary

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Official Symbol
TRAPPC2Lprovided by VGNC
Official Full Name
trafficking protein particle complex subunit 2Lprovided by VGNC
Primary source
VGNC:VGNC:47780
See related
Ensembl:ENSCAFG00845003021
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See TRAPPC2L in Genome Data Viewer
Location:
chromosome: 5
Exon count:
6
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 5 NC_051809.1 (64750913..64754258, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 5 NC_006587.4 (64542220..64545564, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 5 NC_049226.1 (65014780..65018121, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 5 NC_049265.1 (64777042..64780387, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 5 NC_049746.1 (64608690..64612039, complement)

Chromosome 5 - NC_051809.1Genomic Context describing neighboring genes Neighboring gene CBFA2/RUNX1 partner transcriptional co-repressor 3 Neighboring gene PABPN1 like, cytoplasmic Neighboring gene galactosamine (N-acetyl)-6-sulfatase Neighboring gene adenine phosphoribosyltransferase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of TRAPP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
trafficking protein particle complex subunit 2-like protein
Names
trafficking protein particle complex 2 like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051809.1 Reference ROS_Cfam_1.0

    Range
    64750913..64754258 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038666793.1 → XP_038522721.1  trafficking protein particle complex subunit 2-like protein isoform X4

    UniProtKB/TrEMBL
    A0A8C0JV32, A0A8P0SQF8
    Conserved Domains (1) summary
    cd14854
    Location:3 → 135
    TRAPPC2L; Trafficking protein particle complex subunit 2-like

  2. XM_038666791.1 → XP_038522719.1  trafficking protein particle complex subunit 2-like protein isoform X2

    UniProtKB/TrEMBL
    A0A8I3MUS5, A0A8P0SQF8, A0A8P0TS13
    Related
    ENSCAFP00845004259.1, ENSCAFT00845005347.1
    Conserved Domains (1) summary
    cd14854
    Location:3 → 143
    TRAPPC2L; Trafficking protein particle complex subunit 2-like

  3. XM_038666790.1 → XP_038522718.1  trafficking protein particle complex subunit 2-like protein isoform X1

    Conserved Domains (1) summary
    cd14854
    Location:3 → 154
    TRAPPC2L; Trafficking protein particle complex subunit 2-like

  4. XM_038666795.1 → XP_038522723.1  trafficking protein particle complex subunit 2-like protein isoform X6

    UniProtKB/TrEMBL
    A0A8C0NML2
    Conserved Domains (1) summary
    cd14854
    Location:2 → 113
    TRAPPC2L; Trafficking protein particle complex subunit 2-like

  5. XM_038666794.1 → XP_038522722.1  trafficking protein particle complex subunit 2-like protein isoform X5

    UniProtKB/TrEMBL
    A0A8C0NML2
    Conserved Domains (1) summary
    cd14854
    Location:2 → 124
    TRAPPC2L; Trafficking protein particle complex subunit 2-like

  6. XM_038666792.1 → XP_038522720.1  trafficking protein particle complex subunit 2-like protein isoform X3

    Conserved Domains (1) summary
    cd14854
    Location:3 → 138
    TRAPPC2L; Trafficking protein particle complex subunit 2-like

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049265.1 Alternate UMICH_Zoey_3.1

    Range
    64777042..64780387 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038476892.1 → XP_038332820.1  trafficking protein particle complex subunit 2-like protein isoform X4

    Conserved Domains (1) summary
    cd14854
    Location:3 → 135
    TRAPPC2L; Trafficking protein particle complex subunit 2-like

  2. XM_038476890.1 → XP_038332818.1  trafficking protein particle complex subunit 2-like protein isoform X2

    Conserved Domains (1) summary
    cd14854
    Location:3 → 143
    TRAPPC2L; Trafficking protein particle complex subunit 2-like

  3. XM_038476889.1 → XP_038332817.1  trafficking protein particle complex subunit 2-like protein isoform X1

    Conserved Domains (1) summary
    cd14854
    Location:3 → 154
    TRAPPC2L; Trafficking protein particle complex subunit 2-like

  4. XM_038476894.1 → XP_038332822.1  trafficking protein particle complex subunit 2-like protein isoform X6

    Conserved Domains (1) summary
    cd14854
    Location:2 → 113
    TRAPPC2L; Trafficking protein particle complex subunit 2-like

  5. XM_038476893.1 → XP_038332821.1  trafficking protein particle complex subunit 2-like protein isoform X5

    Conserved Domains (1) summary
    cd14854
    Location:2 → 124
    TRAPPC2L; Trafficking protein particle complex subunit 2-like

  6. XM_038476891.1 → XP_038332819.1  trafficking protein particle complex subunit 2-like protein isoform X3

    Conserved Domains (1) summary
    cd14854
    Location:3 → 138
    TRAPPC2L; Trafficking protein particle complex subunit 2-like

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049746.1 Alternate UNSW_CanFamBas_1.0

    Range
    64608690..64612039 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038602177.1 → XP_038458105.1  trafficking protein particle complex subunit 2-like protein isoform X4

    Conserved Domains (1) summary
    cd14854
    Location:3 → 135
    TRAPPC2L; Trafficking protein particle complex subunit 2-like

  2. XM_038602175.1 → XP_038458103.1  trafficking protein particle complex subunit 2-like protein isoform X2

    Conserved Domains (1) summary
    cd14854
    Location:3 → 143
    TRAPPC2L; Trafficking protein particle complex subunit 2-like

  3. XM_038602174.1 → XP_038458102.1  trafficking protein particle complex subunit 2-like protein isoform X1

    Conserved Domains (1) summary
    cd14854
    Location:3 → 154
    TRAPPC2L; Trafficking protein particle complex subunit 2-like

  4. XM_038602179.1 → XP_038458107.1  trafficking protein particle complex subunit 2-like protein isoform X6

    Conserved Domains (1) summary
    cd14854
    Location:2 → 113
    TRAPPC2L; Trafficking protein particle complex subunit 2-like

  5. XM_038602178.1 → XP_038458106.1  trafficking protein particle complex subunit 2-like protein isoform X5

    Conserved Domains (1) summary
    cd14854
    Location:2 → 124
    TRAPPC2L; Trafficking protein particle complex subunit 2-like

  6. XM_038602176.1 → XP_038458104.1  trafficking protein particle complex subunit 2-like protein isoform X3

    Conserved Domains (1) summary
    cd14854
    Location:3 → 138
    TRAPPC2L; Trafficking protein particle complex subunit 2-like

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049226.1 Alternate UU_Cfam_GSD_1.0

    Range
    65014780..65018121 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038538054.1 → XP_038393982.1  trafficking protein particle complex subunit 2-like protein isoform X4

    UniProtKB/TrEMBL
    A0A8C0JV32, A0A8P0SQF8
    Conserved Domains (1) summary
    cd14854
    Location:3 → 135
    TRAPPC2L; Trafficking protein particle complex subunit 2-like

  2. XM_038538052.1 → XP_038393980.1  trafficking protein particle complex subunit 2-like protein isoform X2

    UniProtKB/TrEMBL
    A0A8I3MUS5, A0A8P0SQF8, A0A8P0TS13
    Conserved Domains (1) summary
    cd14854
    Location:3 → 143
    TRAPPC2L; Trafficking protein particle complex subunit 2-like

  3. XM_038538050.1 → XP_038393978.1  trafficking protein particle complex subunit 2-like protein isoform X1

    Conserved Domains (1) summary
    cd14854
    Location:3 → 154
    TRAPPC2L; Trafficking protein particle complex subunit 2-like

  4. XM_038538056.1 → XP_038393984.1  trafficking protein particle complex subunit 2-like protein isoform X6

    UniProtKB/TrEMBL
    A0A8C0NML2
    Conserved Domains (1) summary
    cd14854
    Location:2 → 113
    TRAPPC2L; Trafficking protein particle complex subunit 2-like

  5. XM_038538055.1 → XP_038393983.1  trafficking protein particle complex subunit 2-like protein isoform X5

    UniProtKB/TrEMBL
    A0A8C0NML2
    Conserved Domains (1) summary
    cd14854
    Location:2 → 124
    TRAPPC2L; Trafficking protein particle complex subunit 2-like

  6. XM_038538053.1 → XP_038393981.1  trafficking protein particle complex subunit 2-like protein isoform X3

    Conserved Domains (1) summary
    cd14854
    Location:3 → 138
    TRAPPC2L; Trafficking protein particle complex subunit 2-like

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006587.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    64542220..64545564 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003434684.5 → XP_003434732.1  trafficking protein particle complex subunit 2-like protein isoform X4

    UniProtKB/TrEMBL
    A0A8C0JV32, A0A8P0SQF8
    Conserved Domains (1) summary
    cd14854
    Location:3 → 135
    TRAPPC2L; Trafficking protein particle complex subunit 2-like

  2. XM_005620570.4 → XP_005620627.1  trafficking protein particle complex subunit 2-like protein isoform X2

    UniProtKB/TrEMBL
    A0A8I3MUS5, A0A8P0SQF8, A0A8P0TS13
    Conserved Domains (1) summary
    cd14854
    Location:3 → 143
    TRAPPC2L; Trafficking protein particle complex subunit 2-like

  3. XM_844929.6 → XP_850022.1  trafficking protein particle complex subunit 2-like protein isoform X1

    Conserved Domains (1) summary
    cd14854
    Location:3 → 154
    TRAPPC2L; Trafficking protein particle complex subunit 2-like

  4. XM_005620571.4 → XP_005620628.1  trafficking protein particle complex subunit 2-like protein isoform X6

    UniProtKB/TrEMBL
    A0A8C0NML2
    Conserved Domains (1) summary
    cd14854
    Location:2 → 113
    TRAPPC2L; Trafficking protein particle complex subunit 2-like

  5. XM_014113950.3 → XP_013969425.1  trafficking protein particle complex subunit 2-like protein isoform X5

    UniProtKB/TrEMBL
    A0A8C0NML2
    Conserved Domains (1) summary
    cd14854
    Location:2 → 124
    TRAPPC2L; Trafficking protein particle complex subunit 2-like

  6. XM_038525278.1 → XP_038381206.1  trafficking protein particle complex subunit 2-like protein isoform X3

    Conserved Domains (1) summary
    cd14854
    Location:3 → 138
    TRAPPC2L; Trafficking protein particle complex subunit 2-like
Nucleotide Protein
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