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RBM8A RNA binding motif protein 8A [ Canis lupus familiaris (dog) ]

Gene ID: 475827, updated on 5-Mar-2024

Summary

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Official Symbol
RBM8Aprovided by VGNC
Official Full Name
RNA binding motif protein 8Aprovided by VGNC
Primary source
VGNC:VGNC:45426
See related
Ensembl:ENSCAFG00845011260
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See RBM8A in Genome Data Viewer
Location:
chromosome: 17
Exon count:
6
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 17 NC_051821.1 (59719316..59722888, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 17 NC_006599.4 (58190496..58194070, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 17 NC_049238.1 (59379610..59383186, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 17 NC_049277.1 (58592052..58595627, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 17 NC_049758.1 (58653189..58656764, complement)

Chromosome 17 - NC_051821.1Genomic Context describing neighboring genes Neighboring gene integrin subunit alpha 10 Neighboring gene peroxisomal biogenesis factor 11 beta Neighboring gene gonadotropin releasing hormone receptor 2 (pseudogene) Neighboring gene limb and CNS expressed 1 like Neighboring gene ankyrin repeat domain 34A Neighboring gene RNA polymerase III subunit GL Neighboring gene thioredoxin interacting protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA splicing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of exon-exon junction complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA-binding protein 8A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051821.1 Reference ROS_Cfam_1.0

    Range
    59719316..59722888 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038422987.1 → XP_038278915.1  RNA-binding protein 8A isoform X2

    UniProtKB/TrEMBL
    A0A8I3NI72, A0A8P0TTV8
    Related
    ENSCAFP00845015653.1, ENSCAFT00845019982.1
    Conserved Domains (1) summary
    cd12324
    Location:66 → 150
    RRM_RBM8; RNA recognition motif (RRM) found in RNA-binding protein RBM8A, RBM8B nd similar proteins

  2. XM_038422986.1 → XP_038278914.1  RNA-binding protein 8A isoform X1

    UniProtKB/TrEMBL
    A0A8C0L5I3, A0A8C0MAY3
    Conserved Domains (1) summary
    cd12324
    Location:67 → 151
    RRM_RBM8; RNA recognition motif (RRM) found in RNA-binding protein RBM8A, RBM8B nd similar proteins

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049277.1 Alternate UMICH_Zoey_3.1

    Range
    58592052..58595627 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038499471.1 → XP_038355399.1  RNA-binding protein 8A isoform X2

    Conserved Domains (1) summary
    cd12324
    Location:66 → 150
    RRM_RBM8; RNA recognition motif (RRM) found in RNA-binding protein RBM8A, RBM8B nd similar proteins

  2. XM_038499470.1 → XP_038355398.1  RNA-binding protein 8A isoform X1

    Conserved Domains (1) summary
    cd12324
    Location:67 → 151
    RRM_RBM8; RNA recognition motif (RRM) found in RNA-binding protein RBM8A, RBM8B nd similar proteins

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049758.1 Alternate UNSW_CanFamBas_1.0

    Range
    58653189..58656764 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038626134.1 → XP_038482062.1  RNA-binding protein 8A isoform X2

    Conserved Domains (1) summary
    cd12324
    Location:66 → 150
    RRM_RBM8; RNA recognition motif (RRM) found in RNA-binding protein RBM8A, RBM8B nd similar proteins

  2. XM_038626133.1 → XP_038482061.1  RNA-binding protein 8A isoform X1

    Conserved Domains (1) summary
    cd12324
    Location:67 → 151
    RRM_RBM8; RNA recognition motif (RRM) found in RNA-binding protein RBM8A, RBM8B nd similar proteins

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049238.1 Alternate UU_Cfam_GSD_1.0

    Range
    59379610..59383186 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038562047.1 → XP_038417975.1  RNA-binding protein 8A isoform X2

    UniProtKB/TrEMBL
    A0A8I3NI72, A0A8P0TTV8
    Conserved Domains (1) summary
    cd12324
    Location:66 → 150
    RRM_RBM8; RNA recognition motif (RRM) found in RNA-binding protein RBM8A, RBM8B nd similar proteins

  2. XM_038562046.1 → XP_038417974.1  RNA-binding protein 8A isoform X1

    UniProtKB/TrEMBL
    A0A8C0L5I3, A0A8C0MAY3
    Conserved Domains (1) summary
    cd12324
    Location:67 → 151
    RRM_RBM8; RNA recognition motif (RRM) found in RNA-binding protein RBM8A, RBM8B nd similar proteins

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006599.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    58190496..58194070 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005630728.4 → XP_005630785.1  RNA-binding protein 8A isoform X2

    See identical proteins and their annotated locations for XP_005630785.1

    UniProtKB/TrEMBL
    A0A8I3NI72, A0A8P0TTV8
    Conserved Domains (1) summary
    cd12324
    Location:66 → 150
    RRM_RBM8; RNA recognition motif (RRM) found in RNA-binding protein RBM8A, RBM8B nd similar proteins

  2. XM_533035.7 → XP_533035.1  RNA-binding protein 8A isoform X1

    See identical proteins and their annotated locations for XP_533035.1

    UniProtKB/TrEMBL
    A0A8C0L5I3, A0A8C0MAY3
    Conserved Domains (1) summary
    cd12324
    Location:67 → 151
    RRM_RBM8; RNA recognition motif (RRM) found in RNA-binding protein RBM8A, RBM8B nd similar proteins
Nucleotide Protein
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