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PRPF38A pre-mRNA processing factor 38A [ Canis lupus familiaris (dog) ]

Gene ID: 475350, updated on 17-Aug-2024

Summary

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Official Symbol
PRPF38Aprovided by VGNC
Official Full Name
pre-mRNA processing factor 38Aprovided by VGNC
Primary source
VGNC:VGNC:45022
See related
Ensembl:ENSCAFG00845019909
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 15
Exon count:
10
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 15 NC_051819.1 (9073781..9088612, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 15 NC_006597.4 (9102871..9117451, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 15 NC_049236.1 (8993892..9008478, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 15 NC_049275.1 (8887061..8901642, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 15 NC_049756.1 (8975959..8990542, complement)

Chromosome 15 - NC_051819.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119869305 Neighboring gene glutathione peroxidase 7 Neighboring gene ataxin-7-like protein 3B Neighboring gene terminal uridylyl transferase 4 Neighboring gene uncharacterized LOC119869309 Neighboring gene origin recognition complex subunit 1 Neighboring gene coiled-coil and C2 domain containing 1B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pre-mRNA-splicing factor 38A
Names
PRP38 pre-mRNA processing factor 38 domain containing A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051819.1 Reference ROS_Cfam_1.0

    Range
    9073781..9088612 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038687653.1 → XP_038543581.1  pre-mRNA-splicing factor 38A

    UniProtKB/TrEMBL
    A0A8C0KD42, A0A8C0N1M4, A0A8I3S1D7, A0A8P0S9G2
    Related
    ENSCAFP00845027458.1, ENSCAFT00845035074.1
    Conserved Domains (1) summary
    pfam03371
    Location:10 → 172
    PRP38; PRP38 family

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049275.1 Alternate UMICH_Zoey_3.1

    Range
    8887061..8901642 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038495664.1 → XP_038351592.1  pre-mRNA-splicing factor 38A

    Conserved Domains (1) summary
    pfam03371
    Location:10 → 172
    PRP38; PRP38 family

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049756.1 Alternate UNSW_CanFamBas_1.0

    Range
    8975959..8990542 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038621887.1 → XP_038477815.1  pre-mRNA-splicing factor 38A

    Conserved Domains (1) summary
    pfam03371
    Location:10 → 172
    PRP38; PRP38 family

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049236.1 Alternate UU_Cfam_GSD_1.0

    Range
    8993892..9008478 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038558025.1 → XP_038413953.1  pre-mRNA-splicing factor 38A

    UniProtKB/TrEMBL
    A0A8C0KD42, A0A8C0N1M4, A0A8I3S1D7, A0A8P0S9G2
    Conserved Domains (1) summary
    pfam03371
    Location:10 → 172
    PRP38; PRP38 family

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006597.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    9102871..9117451 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_532574.7 → XP_532574.2  pre-mRNA-splicing factor 38A

    See identical proteins and their annotated locations for XP_532574.2

    UniProtKB/TrEMBL
    A0A8C0KD42, A0A8C0N1M4, A0A8I3S1D7, A0A8P0S9G2
    Conserved Domains (1) summary
    pfam03371
    Location:10 → 172
    PRP38; PRP38 family
Nucleotide Protein
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