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RNF20 ring finger protein 20 [ Canis lupus familiaris (dog) ]

Gene ID: 474788, updated on 5-Mar-2024

Summary

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Official Symbol
RNF20provided by VGNC
Official Full Name
ring finger protein 20provided by VGNC
Primary source
VGNC:VGNC:45653
See related
Ensembl:ENSCAFG00845009367
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See RNF20 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
24
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 11 NC_051815.1 (59374518..59402216)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 11 NC_006593.4 (56683443..56711138)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 11 NC_049232.1 (58594981..58622677)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 11 NC_049271.1 (57884293..57911989)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 11 NC_049752.1 (57897263..57924945)

Chromosome 11 - NC_051815.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111097953 Neighboring gene U6 spliceosomal RNA Neighboring gene post-GPI attachment to proteins GalNAc transferase 4 Neighboring gene glutamate ionotropic receptor NMDA type subunit 3A Neighboring gene protein phosphatase 3 regulatory subunit B, beta Neighboring gene uncharacterized LOC111098110

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of HULC complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase BRE1A
XP_005626937.1
XP_022281368.1
XP_038346786.1
XP_038346787.1
XP_038346788.1
XP_038346789.1
XP_038408905.1
XP_038408906.1
XP_038408907.1
XP_038408908.1
XP_038472787.1
XP_038472789.1
XP_038472790.1
XP_038472791.1
XP_038517790.1
XP_038538243.1
XP_038538244.1
XP_038538245.1
XP_038538246.1
XP_532018.3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051815.1 Reference ROS_Cfam_1.0

    Range
    59374518..59402216
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038682316.1 → XP_038538244.1  E3 ubiquitin-protein ligase BRE1A isoform X2

    UniProtKB/TrEMBL
    A0A8C0L8P0, A0A8C0QN41, A0A8I3N6U1
    Related
    ENSCAFP00845012847.1, ENSCAFT00845016518.1
    Conserved Domains (3) summary
    COG1196
    Location:626 → 894
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:44 → 759
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    cd16704
    Location:920 → 965
    RING-HC_RNF20_like; RING finger, HC subclass, found in RING finger protein RNF20, RNF40, and similar proteins

  2. XM_038682318.1 → XP_038538246.1  E3 ubiquitin-protein ligase BRE1A isoform X2

    UniProtKB/TrEMBL
    A0A8C0L8P0, A0A8C0QN41, A0A8I3N6U1
    Conserved Domains (3) summary
    COG1196
    Location:626 → 894
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:44 → 759
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    cd16704
    Location:920 → 965
    RING-HC_RNF20_like; RING finger, HC subclass, found in RING finger protein RNF20, RNF40, and similar proteins

  3. XM_038682317.1 → XP_038538245.1  E3 ubiquitin-protein ligase BRE1A isoform X2

    UniProtKB/TrEMBL
    A0A8C0L8P0, A0A8C0QN41, A0A8I3N6U1
    Conserved Domains (3) summary
    COG1196
    Location:626 → 894
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:44 → 759
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    cd16704
    Location:920 → 965
    RING-HC_RNF20_like; RING finger, HC subclass, found in RING finger protein RNF20, RNF40, and similar proteins

  4. XM_038682315.1 → XP_038538243.1  E3 ubiquitin-protein ligase BRE1A isoform X1

    UniProtKB/TrEMBL
    A0A8C0L8P0
    Conserved Domains (4) summary
    PTZ00121
    Location:332 → 910
    PTZ00121; MAEBL; Provisional
    COG1196
    Location:41 → 406
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd16704
    Location:932 → 977
    RING-HC_RNF20_like; RING finger, HC subclass, found in RING finger protein RNF20, RNF40, and similar proteins
    NF033930
    Location:523 → 757
    pneumo_PspA; pneumococcal surface protein A

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049271.1 Alternate UMICH_Zoey_3.1

    Range
    57884293..57911989
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038490859.1 → XP_038346787.1  E3 ubiquitin-protein ligase BRE1A isoform X2

    Conserved Domains (3) summary
    COG1196
    Location:626 → 894
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:44 → 759
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    cd16704
    Location:920 → 965
    RING-HC_RNF20_like; RING finger, HC subclass, found in RING finger protein RNF20, RNF40, and similar proteins

  2. XM_038490861.1 → XP_038346789.1  E3 ubiquitin-protein ligase BRE1A isoform X2

    Conserved Domains (3) summary
    COG1196
    Location:626 → 894
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:44 → 759
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    cd16704
    Location:920 → 965
    RING-HC_RNF20_like; RING finger, HC subclass, found in RING finger protein RNF20, RNF40, and similar proteins

  3. XM_038490860.1 → XP_038346788.1  E3 ubiquitin-protein ligase BRE1A isoform X2

    Conserved Domains (3) summary
    COG1196
    Location:626 → 894
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:44 → 759
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    cd16704
    Location:920 → 965
    RING-HC_RNF20_like; RING finger, HC subclass, found in RING finger protein RNF20, RNF40, and similar proteins

  4. XM_038490858.1 → XP_038346786.1  E3 ubiquitin-protein ligase BRE1A isoform X1

    Conserved Domains (4) summary
    PTZ00121
    Location:332 → 910
    PTZ00121; MAEBL; Provisional
    COG1196
    Location:41 → 406
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd16704
    Location:932 → 977
    RING-HC_RNF20_like; RING finger, HC subclass, found in RING finger protein RNF20, RNF40, and similar proteins
    NF033930
    Location:523 → 757
    pneumo_PspA; pneumococcal surface protein A

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049752.1 Alternate UNSW_CanFamBas_1.0

    Range
    57897263..57924945
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038616861.1 → XP_038472789.1  E3 ubiquitin-protein ligase BRE1A isoform X2

    Conserved Domains (3) summary
    COG1196
    Location:622 → 920
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:44 → 759
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    cd16704
    Location:920 → 965
    RING-HC_RNF20_like; RING finger, HC subclass, found in RING finger protein RNF20, RNF40, and similar proteins

  2. XM_038616863.1 → XP_038472791.1  E3 ubiquitin-protein ligase BRE1A isoform X2

    Conserved Domains (3) summary
    COG1196
    Location:622 → 920
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:44 → 759
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    cd16704
    Location:920 → 965
    RING-HC_RNF20_like; RING finger, HC subclass, found in RING finger protein RNF20, RNF40, and similar proteins

  3. XM_038616862.1 → XP_038472790.1  E3 ubiquitin-protein ligase BRE1A isoform X2

    Conserved Domains (3) summary
    COG1196
    Location:622 → 920
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:44 → 759
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    cd16704
    Location:920 → 965
    RING-HC_RNF20_like; RING finger, HC subclass, found in RING finger protein RNF20, RNF40, and similar proteins

  4. XM_038616859.1 → XP_038472787.1  E3 ubiquitin-protein ligase BRE1A isoform X1

    Conserved Domains (2) summary
    pfam15921
    Location:199 → 908
    CCDC158; Coiled-coil domain-containing protein 158
    cd16704
    Location:932 → 977
    RING-HC_RNF20_like; RING finger, HC subclass, found in RING finger protein RNF20, RNF40, and similar proteins

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049232.1 Alternate UU_Cfam_GSD_1.0

    Range
    58594981..58622677
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038552978.1 → XP_038408906.1  E3 ubiquitin-protein ligase BRE1A isoform X2

    UniProtKB/TrEMBL
    A0A8C0L8P0, A0A8C0QN41, A0A8I3N6U1
    Conserved Domains (3) summary
    COG1196
    Location:626 → 894
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:44 → 759
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    cd16704
    Location:920 → 965
    RING-HC_RNF20_like; RING finger, HC subclass, found in RING finger protein RNF20, RNF40, and similar proteins

  2. XM_038552980.1 → XP_038408908.1  E3 ubiquitin-protein ligase BRE1A isoform X2

    UniProtKB/TrEMBL
    A0A8C0L8P0, A0A8C0QN41, A0A8I3N6U1
    Conserved Domains (3) summary
    COG1196
    Location:626 → 894
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:44 → 759
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    cd16704
    Location:920 → 965
    RING-HC_RNF20_like; RING finger, HC subclass, found in RING finger protein RNF20, RNF40, and similar proteins

  3. XM_038552979.1 → XP_038408907.1  E3 ubiquitin-protein ligase BRE1A isoform X2

    UniProtKB/TrEMBL
    A0A8C0L8P0, A0A8C0QN41, A0A8I3N6U1
    Conserved Domains (3) summary
    COG1196
    Location:626 → 894
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:44 → 759
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    cd16704
    Location:920 → 965
    RING-HC_RNF20_like; RING finger, HC subclass, found in RING finger protein RNF20, RNF40, and similar proteins

  4. XM_038552977.1 → XP_038408905.1  E3 ubiquitin-protein ligase BRE1A isoform X1

    UniProtKB/TrEMBL
    A0A8C0L8P0
    Conserved Domains (4) summary
    PTZ00121
    Location:332 → 910
    PTZ00121; MAEBL; Provisional
    COG1196
    Location:41 → 406
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd16704
    Location:932 → 977
    RING-HC_RNF20_like; RING finger, HC subclass, found in RING finger protein RNF20, RNF40, and similar proteins
    NF033930
    Location:523 → 757
    pneumo_PspA; pneumococcal surface protein A

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006593.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    56683443..56711138
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_532018.6 → XP_532018.3  E3 ubiquitin-protein ligase BRE1A isoform X2

    See identical proteins and their annotated locations for XP_532018.3

    UniProtKB/TrEMBL
    A0A8C0L8P0, A0A8C0QN41, A0A8I3N6U1
    Conserved Domains (3) summary
    COG1196
    Location:626 → 894
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:44 → 759
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    cd16704
    Location:920 → 965
    RING-HC_RNF20_like; RING finger, HC subclass, found in RING finger protein RNF20, RNF40, and similar proteins

  2. XM_022425660.2 → XP_022281368.1  E3 ubiquitin-protein ligase BRE1A isoform X2

    UniProtKB/TrEMBL
    A0A8C0L8P0, A0A8C0QN41, A0A8I3N6U1
    Conserved Domains (3) summary
    COG1196
    Location:626 → 894
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:44 → 759
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    cd16704
    Location:920 → 965
    RING-HC_RNF20_like; RING finger, HC subclass, found in RING finger protein RNF20, RNF40, and similar proteins

  3. XM_005626880.4 → XP_005626937.1  E3 ubiquitin-protein ligase BRE1A isoform X2

    See identical proteins and their annotated locations for XP_005626937.1

    UniProtKB/TrEMBL
    A0A8C0L8P0, A0A8C0QN41, A0A8I3N6U1
    Conserved Domains (3) summary
    COG1196
    Location:626 → 894
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:44 → 759
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    cd16704
    Location:920 → 965
    RING-HC_RNF20_like; RING finger, HC subclass, found in RING finger protein RNF20, RNF40, and similar proteins

  4. XM_038661862.1 → XP_038517790.1  E3 ubiquitin-protein ligase BRE1A isoform X1

    UniProtKB/TrEMBL
    A0A8C0L8P0
    Conserved Domains (4) summary
    PTZ00121
    Location:332 → 910
    PTZ00121; MAEBL; Provisional
    COG1196
    Location:41 → 406
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd16704
    Location:932 → 977
    RING-HC_RNF20_like; RING finger, HC subclass, found in RING finger protein RNF20, RNF40, and similar proteins
    NF033930
    Location:523 → 757
    pneumo_PspA; pneumococcal surface protein A
Nucleotide Protein
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