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TMEM17 transmembrane protein 17 [ Canis lupus familiaris (dog) ]

Gene ID: 474612, updated on 17-Aug-2024

Summary

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Official Symbol
TMEM17provided by VGNC
Official Full Name
transmembrane protein 17provided by VGNC
Primary source
VGNC:VGNC:47496
See related
Ensembl:ENSCAFG00845016745
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 10
Exon count:
4
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 10 NC_051814.1 (63363234..63368846, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 10 NC_006592.4 (62243628..62249224, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 10 NC_049231.1 (63646177..63651789, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 10 NC_049270.1 (63046203..63051806, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 10 NC_049751.1 (63349705..63355323, complement)

Chromosome 10 - NC_051814.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111097778 Neighboring gene uncharacterized LOC106559436 Neighboring gene uncharacterized LOC106559435 Neighboring gene uncharacterized LOC111097779 Neighboring gene EH domain binding protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in non-motile cilium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in ciliary transition zone IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane protein 17

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051814.1 Reference ROS_Cfam_1.0

    Range
    63363234..63368846 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038680723.1 → XP_038536651.1  transmembrane protein 17

    UniProtKB/TrEMBL
    A0A8C0Q6Y9, A0A8C0R8Q0, A0A8I3P2T5
    Related
    ENSCAFP00845023305.1, ENSCAFT00845029671.1
    Conserved Domains (1) summary
    pfam09799
    Location:48 → 151
    Transmemb_17; Predicted membrane protein

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049270.1 Alternate UMICH_Zoey_3.1

    Range
    63046203..63051806 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038489418.1 → XP_038345346.1  transmembrane protein 17

    Conserved Domains (1) summary
    pfam09799
    Location:48 → 151
    Transmemb_17; Predicted membrane protein

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049751.1 Alternate UNSW_CanFamBas_1.0

    Range
    63349705..63355323 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038615335.1 → XP_038471263.1  transmembrane protein 17

    Conserved Domains (1) summary
    pfam09799
    Location:48 → 151
    Transmemb_17; Predicted membrane protein

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049231.1 Alternate UU_Cfam_GSD_1.0

    Range
    63646177..63651789 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038551400.1 → XP_038407328.1  transmembrane protein 17

    UniProtKB/TrEMBL
    A0A8C0Q6Y9, A0A8C0R8Q0, A0A8I3P2T5
    Conserved Domains (1) summary
    pfam09799
    Location:48 → 151
    Transmemb_17; Predicted membrane protein

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006592.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    62243628..62249224 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_531842.7 → XP_531842.1  transmembrane protein 17

    UniProtKB/TrEMBL
    A0A8P0S8U9
    Conserved Domains (1) summary
    pfam09799
    Location:48 → 151
    Transmemb_17; Predicted membrane protein
Nucleotide Protein
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