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TSPO translocator protein [ Canis lupus familiaris (dog) ]

Gene ID: 474475, updated on 5-Mar-2024

Summary

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Official Symbol
TSPOprovided by VGNC
Official Full Name
translocator proteinprovided by VGNC
Primary source
VGNC:VGNC:54552
See related
Ensembl:ENSCAFG00845014235
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See TSPO in Genome Data Viewer
Location:
chromosome: 10
Exon count:
4
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 10 NC_051814.1 (23132949..23143978, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 10 NC_006592.4 (22325190..22336049, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 10 NC_049231.1 (23347120..23357948, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 10 NC_049270.1 (22852287..22863109, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 10 NC_049751.1 (23171467..23182483, complement)

Chromosome 10 - NC_051814.1Genomic Context describing neighboring genes Neighboring gene signal peptide, CUB domain and EGF like domain containing 1 Neighboring gene tubulin tyrosine ligase like 12 Neighboring gene malonyl-CoA-acyl carrier protein transacylase Neighboring gene BCL2 interacting killer

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cholesterol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
translocator protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051814.1 Reference ROS_Cfam_1.0

    Range
    23132949..23143978 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038679615.1 → XP_038535543.1  translocator protein

    UniProtKB/TrEMBL
    A0A8C0KCS8, A0A8C0M9V3, A0A8I3NSR5
    Related
    ENSCAFP00845020028.1, ENSCAFT00845025440.1
    Conserved Domains (1) summary
    pfam03073
    Location:11 → 140
    TspO_MBR; TspO/MBR family

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049270.1 Alternate UMICH_Zoey_3.1

    Range
    22852287..22863109 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038488382.1 → XP_038344310.1  translocator protein

    Conserved Domains (1) summary
    pfam03073
    Location:11 → 140
    TspO_MBR; TspO/MBR family

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049751.1 Alternate UNSW_CanFamBas_1.0

    Range
    23171467..23182483 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038614275.1 → XP_038470203.1  translocator protein

    Conserved Domains (1) summary
    pfam03073
    Location:11 → 140
    TspO_MBR; TspO/MBR family

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049231.1 Alternate UU_Cfam_GSD_1.0

    Range
    23347120..23357948 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038550296.1 → XP_038406224.1  translocator protein

    UniProtKB/TrEMBL
    A0A8C0KCS8, A0A8C0M9V3, A0A8I3NSR5
    Conserved Domains (1) summary
    pfam03073
    Location:11 → 140
    TspO_MBR; TspO/MBR family

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006592.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    22325190..22336049 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005625774.4 → XP_005625831.1  translocator protein

    UniProtKB/TrEMBL
    A0A8C0KCS8, A0A8C0M9V3, A0A8I3NSR5
    Conserved Domains (1) summary
    pfam03073
    Location:11 → 140
    TspO_MBR; TspO/MBR family
Nucleotide Protein
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