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PTCHD4 patched domain containing 4 [ Pan troglodytes (chimpanzee) ]

Gene ID: 472023, updated on 17-Aug-2024

Summary

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Official Symbol
PTCHD4provided by VGNC
Official Full Name
patched domain containing 4provided by VGNC
Primary source
VGNC:VGNC:3676
Locus tag
CK820_G0007355
See related
Ensembl:ENSPTRG00000018252
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See PTCHD4 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 5 NC_072403.2 (53752798..53944481, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 6 NC_072404.1 (53748909..53944594, complement)

Chromosome 5 - NC_072403.2Genomic Context describing neighboring genes Neighboring gene U1 spliceosomal RNA Neighboring gene uncharacterized LOC129144256 Neighboring gene heterogeneous nuclear ribonucleoprotein A3-like Neighboring gene RNA-binding motif protein, X chromosome-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
patched domain-containing protein 4
Names
patched domain-containing protein C6orf138 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072403.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    53752798..53944481 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016955654.4 → XP_016811143.1  patched domain-containing protein 4 isoform X2

  2. XM_527402.8 → XP_527402.3  patched domain-containing protein 4 isoform X3

    UniProtKB/TrEMBL
    A0A2J8P0S5, A0A6D2WUJ7, H2QT51
    Related
    ENSPTRP00000031186.4
    Conserved Domains (1) summary
    cl25655
    Location:148 → 812
    Patched; Patched family

  3. XM_001146259.7 → XP_001146259.2  patched domain-containing protein 4 isoform X1

    Conserved Domains (2) summary
    pfam02460
    Location:141 → 870
    Patched; Patched family
    cl21543
    Location:315 → 466
    MMPL; MMPL family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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