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SEMA4F ssemaphorin 4F [ Pan troglodytes (chimpanzee) ]

Gene ID: 470411, updated on 17-Aug-2024

Summary

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Official Symbol
SEMA4Fprovided by VGNC
Official Full Name
ssemaphorin 4Fprovided by VGNC
Primary source
VGNC:VGNC:6657
Locus tag
CK820_G0035701
See related
Ensembl:ENSPTRG00000012103
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 12
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 12 NC_072410.2 (48039779..48097353, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 2A NC_072399.1 (74755964..74813454)

Chromosome 12 - NC_072410.2Genomic Context describing neighboring genes Neighboring gene hexokinase 2 Neighboring gene uncharacterized LOC107973525 Neighboring gene uncharacterized LOC104005040 Neighboring gene Golgi apparatus membrane protein TVP23 homolog B-like Neighboring gene torsin-1B-like Neighboring gene meiosis 1 associated protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chemorepellent activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables semaphorin receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative chemotaxis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of axon extension involved in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neural crest cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in semaphorin-plexin signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
semaphorin-4F
Names
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4F
semaphorin W

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072410.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    48039779..48097353 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016948848.4 → XP_016804337.1  semaphorin-4F isoform X3

    Conserved Domains (3) summary
    cd11261
    Location:52 → 511
    Sema_4F; The Sema domain, a protein interacting module, of semaphorin 4F (Sema4F)
    pfam01437
    Location:512 → 563
    PSI; Plexin repeat
    cl11960
    Location:570 → 616
    Ig; Immunoglobulin domain

  2. XM_016948846.3 → XP_016804335.1  semaphorin-4F isoform X1

    UniProtKB/TrEMBL
    A0A2J8KV65, A0A6D2W7A3, H2R1X0
    Related
    ENSPTRP00000043012.5
    Conserved Domains (3) summary
    cd11261
    Location:52 → 511
    Sema_4F; The Sema domain, a protein interacting module, of semaphorin 4F (Sema4F)
    pfam01437
    Location:512 → 563
    PSI; Plexin repeat
    cl11960
    Location:570 → 649
    Ig; Immunoglobulin domain

  3. XM_016948850.3 → XP_016804339.1  semaphorin-4F isoform X4

    UniProtKB/TrEMBL
    A0A2I3SIF8, A0A2J8KV69, A0A6D2XSK4
    Related
    ENSPTRP00000076826.1
    Conserved Domains (3) summary
    pfam01437
    Location:357 → 408
    PSI; Plexin repeat
    cl11960
    Location:415 → 494
    Ig; Immunoglobulin domain
    cl15693
    Location:52 → 356
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  4. XM_016948847.3 → XP_016804336.1  semaphorin-4F isoform X2

    UniProtKB/TrEMBL
    A0A2I3TRU8, A0A2J8KV73, A0A6D2WBE6
    Related
    ENSPTRP00000091948.1
    Conserved Domains (3) summary
    cd11261
    Location:52 → 478
    Sema_4F; The Sema domain, a protein interacting module, of semaphorin 4F (Sema4F)
    pfam01437
    Location:479 → 530
    PSI; Plexin repeat
    cl11960
    Location:537 → 616
    Ig; Immunoglobulin domain

RNA

  1. XR_008546283.2 RNA Sequence

  2. XR_008546282.2 RNA Sequence

  3. XR_010149356.1 RNA Sequence

Nucleotide Protein
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