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LOC469021 putative zinc finger and SCAN domain-containing protein 5D [ Pan troglodytes (chimpanzee) ]

Gene ID: 469021, updated on 29-Mar-2024

Summary

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Gene symbol
LOC469021
Gene description
putative zinc finger and SCAN domain-containing protein 5D
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Also known as
ZSCAN5; ZSCAN5D
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Genomic context

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See LOC469021 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 20 NC_072418.2 (59191986..59195444)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 19 NC_072417.1 (59192020..59195478)

Chromosome 20 - NC_072418.2Genomic Context describing neighboring genes Neighboring gene zinc finger and SCAN domain containing 5C Neighboring gene zinc finger and SCAN domain containing 5B Neighboring gene large ribosomal subunit protein eL13-like Neighboring gene zinc finger and SCAN domain containing 5A Neighboring gene epididymal protein 13 Neighboring gene uncharacterized LOC134809055 Neighboring gene vomeronasal 2 receptor 114 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative zinc finger and SCAN domain-containing protein 5D; zinc finger and SCAN domain containing 5D
Names
zinc finger and SCAN domain containing 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072418.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    59191986..59195444
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009436478.4 → XP_009434753.3  putative zinc finger and SCAN domain-containing protein 5D

    Conserved Domains (4) summary
    cd07936
    Location:40 → 124
    SCAN; SCAN oligomerization domain
    COG5189
    Location:408 → 488
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:358 → 378
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:371 → 395
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

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