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SEMA6D semaphorin 6D [ Pan troglodytes (chimpanzee) ]

Gene ID: 467674, updated on 3-Apr-2024

Summary

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Official Symbol
SEMA6Dprovided by VGNC
Official Full Name
semaphorin 6Dprovided by VGNC
Primary source
VGNC:VGNC:6587
Locus tag
CK820_G0008663
See related
Ensembl:ENSPTRG00000007040
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See SEMA6D in Genome Data Viewer
Location:
chromosome: 15
Exon count:
25
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 16 NC_072414.2 (39174260..39763810)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 15 NC_072413.1 (39149123..39738672)

Chromosome 16 - NC_072414.2Genomic Context describing neighboring genes Neighboring gene cytochrome b5 type B-like Neighboring gene uncharacterized LOC134808566 Neighboring gene uncharacterized LOC107968616 Neighboring gene large ribosomal subunit protein eL8-like Neighboring gene uncharacterized LOC104002299 Neighboring gene uncharacterized LOC134808445

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chemorepellent activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables semaphorin receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative chemotaxis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of axon extension involved in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neural crest cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in semaphorin-plexin signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
semaphorin-6D
Names
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072414.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    39174260..39763810
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016928165.3 → XP_016783654.1  semaphorin-6D isoform X1

    UniProtKB/TrEMBL
    A0A2I3SY21, A0A2I3TVG2
    Conserved Domains (3) summary
    pfam01437
    Location:514 → 543
    PSI; Plexin repeat
    cl15693
    Location:49 → 513
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins
    cl25496
    Location:944 → 1080
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

  2. XM_009429065.4 → XP_009427340.1  semaphorin-6D isoform X1

    See identical proteins and their annotated locations for XP_009427340.1

    UniProtKB/TrEMBL
    A0A2I3SY21, A0A2I3TVG2
    Conserved Domains (3) summary
    pfam01437
    Location:514 → 543
    PSI; Plexin repeat
    cl15693
    Location:49 → 513
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins
    cl25496
    Location:944 → 1080
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

  3. XM_001164625.7 → XP_001164625.1  semaphorin-6D isoform X7

    See identical proteins and their annotated locations for XP_001164625.1

    UniProtKB/TrEMBL
    A0A2I3T957, A0A2I3TVG2, A0A2J8NTH3, A0A6D2WYH2
    Conserved Domains (3) summary
    pfam01437
    Location:514 → 543
    PSI; Plexin repeat
    cl15693
    Location:49 → 513
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins
    cl25496
    Location:869 → 1005
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

  4. XM_063794079.1 → XP_063650149.1  semaphorin-6D isoform X1

    UniProtKB/TrEMBL
    A0A2I3SY21

  5. XM_063794078.1 → XP_063650148.1  semaphorin-6D isoform X1

    UniProtKB/TrEMBL
    A0A2I3SY21

  6. XM_016928163.4 → XP_016783652.1  semaphorin-6D isoform X1

    UniProtKB/TrEMBL
    A0A2I3SY21, A0A2I3TVG2
    Conserved Domains (3) summary
    pfam01437
    Location:514 → 543
    PSI; Plexin repeat
    cl15693
    Location:49 → 513
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins
    cl25496
    Location:944 → 1080
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

  7. XM_009429064.5 → XP_009427339.1  semaphorin-6D isoform X1

    See identical proteins and their annotated locations for XP_009427339.1

    UniProtKB/TrEMBL
    A0A2I3SY21, A0A2I3TVG2
    Conserved Domains (3) summary
    pfam01437
    Location:514 → 543
    PSI; Plexin repeat
    cl15693
    Location:49 → 513
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins
    cl25496
    Location:944 → 1080
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

  8. XM_003314718.7 → XP_003314766.1  semaphorin-6D isoform X2

    See identical proteins and their annotated locations for XP_003314766.1

    UniProtKB/TrEMBL
    A0A2I3TVG2, A0A2J8NTD6, A0A6D2XGK5, H2R398
    Conserved Domains (3) summary
    pfam01437
    Location:514 → 569
    PSI; Plexin repeat
    cl15693
    Location:49 → 513
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins
    cl25496
    Location:931 → 1067
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

  9. XM_016928164.3 → XP_016783653.1  semaphorin-6D isoform X1

    UniProtKB/TrEMBL
    A0A2I3SY21, A0A2I3TVG2
    Related
    ENSPTRP00000081895.1
    Conserved Domains (3) summary
    pfam01437
    Location:514 → 543
    PSI; Plexin repeat
    cl15693
    Location:49 → 513
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins
    cl25496
    Location:944 → 1080
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

  10. XM_063794082.1 → XP_063650152.1  semaphorin-6D isoform X6

    UniProtKB/TrEMBL
    A0A2I3S5I9, A0A2J8NTD9, A0A6D2Y9Q7

  11. XM_009429062.5 → XP_009427337.1  semaphorin-6D isoform X1

    See identical proteins and their annotated locations for XP_009427337.1

    UniProtKB/TrEMBL
    A0A2I3SY21, A0A2I3TVG2
    Conserved Domains (3) summary
    pfam01437
    Location:514 → 543
    PSI; Plexin repeat
    cl15693
    Location:49 → 513
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins
    cl25496
    Location:944 → 1080
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

  12. XM_063794081.1 → XP_063650151.1  semaphorin-6D isoform X5

  13. XM_063794080.1 → XP_063650150.1  semaphorin-6D isoform X3

    UniProtKB/TrEMBL
    A0A2I3TIL0

  14. XM_523068.9 → XP_523068.2  semaphorin-6D isoform X2

    See identical proteins and their annotated locations for XP_523068.2

    UniProtKB/TrEMBL
    A0A2I3TVG2, A0A2J8NTD6, A0A6D2XGK5, H2R398
    Related
    ENSPTRP00000045144.3
    Conserved Domains (3) summary
    pfam01437
    Location:514 → 569
    PSI; Plexin repeat
    cl15693
    Location:49 → 513
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins
    cl25496
    Location:931 → 1067
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

  15. XM_009429068.5 → XP_009427343.1  semaphorin-6D isoform X4

    UniProtKB/TrEMBL
    A0A2I3TVG2
    Conserved Domains (2) summary
    pfam01437
    Location:514 → 569
    PSI; Plexin repeat
    cl15693
    Location:49 → 513
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  16. XM_001164924.7 → XP_001164924.1  semaphorin-6D isoform X7

    See identical proteins and their annotated locations for XP_001164924.1

    UniProtKB/TrEMBL
    A0A2I3T957, A0A2I3TVG2, A0A2J8NTH3, A0A6D2WYH2
    Related
    ENSPTRP00000085771.1
    Conserved Domains (3) summary
    pfam01437
    Location:514 → 543
    PSI; Plexin repeat
    cl15693
    Location:49 → 513
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins
    cl25496
    Location:869 → 1005
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

  17. XM_001164699.7 → XP_001164699.1  semaphorin-6D isoform X6

    UniProtKB/TrEMBL
    A0A2I3S5I9, A0A2I3TVG2, A0A2J8NTD9, A0A6D2Y9Q7
    Related
    ENSPTRP00000071829.1
    Conserved Domains (3) summary
    pfam01437
    Location:514 → 569
    PSI; Plexin repeat
    cl15693
    Location:49 → 513
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins
    cl25496
    Location:875 → 1011
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

  18. XM_001164888.7 → XP_001164888.1  semaphorin-6D isoform X8

    UniProtKB/TrEMBL
    A0A2I3TVG2, A0A2J8NTE3
    Conserved Domains (3) summary
    pfam01437
    Location:514 → 569
    PSI; Plexin repeat
    cl15693
    Location:49 → 513
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins
    cl25496
    Location:856 → 992
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

  19. XM_054666904.2 → XP_054522879.1  semaphorin-6D isoform X1

    UniProtKB/TrEMBL
    A0A2I3SY21

  20. XM_016928173.3 → XP_016783662.1  semaphorin-6D isoform X9

    UniProtKB/TrEMBL
    A0A2I3TVG2
Nucleotide Protein
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