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VPS13A vacuolar protein sorting 13 homolog A [ Pan troglodytes (chimpanzee) ]

Gene ID: 464538, updated on 17-Aug-2024

Summary

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Official Symbol
VPS13Aprovided by VGNC
Official Full Name
vacuolar protein sorting 13 homolog Aprovided by VGNC
Primary source
VGNC:VGNC:10118
Locus tag
CK820_G0017819
See related
Ensembl:ENSPTRG00000021041
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 11
Exon count:
75
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 11 NC_072409.2 (67660566..67900224)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 9 NC_072407.1 (50968492..51208150, complement)

Chromosome 11 - NC_072409.2Genomic Context describing neighboring genes Neighboring gene ATP synthase subunit f, mitochondrial-like Neighboring gene forkhead box B2 Neighboring gene uncharacterized LOC134807665 Neighboring gene G protein subunit alpha 14 Neighboring gene nuclear transport factor 2-like Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in autophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein retention in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein targeting to vacuole IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extrinsic component of membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vacuolar protein sorting-associated protein 13A; intermembrane lipid transfer protein VPS13A
Names
vacuolar protein sorting 13A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072409.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    67660566..67900224
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016960977.3 → XP_016816466.1  intermembrane lipid transfer protein VPS13A isoform X2

    UniProtKB/TrEMBL
    A0A2I3TA61, A0A2J8MRH7, A0A2J8MRI9, A0A6D2W3Q9, A0A6D2W3W5, H2R6M5
    Related
    ENSPTRP00000049270.3
    Conserved Domains (6) summary
    pfam06650
    Location:2209 → 2452
    SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
    pfam12624
    Location:4 → 113
    Chorein_N; N-terminal region of Chorein or VPS13
    pfam16908
    Location:142 → 371
    VPS13; Vacuolar sorting-associated protein 13, N-terminal
    pfam16909
    Location:2766 → 2943
    VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal
    pfam16910
    Location:569 → 793
    VPS13_mid_rpt; Repeating coiled region of VPS13
    cl25572
    Location:2598 → 3098
    VPS13; Vacuolar sorting-associated protein 13, N-terminal

  2. XM_016960984.4 → XP_016816473.1  intermembrane lipid transfer protein VPS13A isoform X7

    UniProtKB/TrEMBL
    A0A2I3RQS7, A0A2J8MRG0, A0A6D2XHL8, K7B738
    Related
    ENSPTRP00000070540.1
    Conserved Domains (6) summary
    pfam06650
    Location:2209 → 2452
    SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
    pfam12624
    Location:4 → 113
    Chorein_N; N-terminal region of Chorein or VPS13
    pfam16908
    Location:142 → 371
    VPS13; Vacuolar sorting-associated protein 13, N-terminal
    pfam16909
    Location:2766 → 2943
    VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal
    pfam16910
    Location:569 → 793
    VPS13_mid_rpt; Repeating coiled region of VPS13
    cl25572
    Location:2598 → 3062
    VPS13; Vacuolar sorting-associated protein 13, N-terminal

  3. XM_016960980.4 → XP_016816469.1  intermembrane lipid transfer protein VPS13A isoform X4

    UniProtKB/TrEMBL
    A0A2I3RQS7, A0A2I3TJ01, A0A2J8MRI2, A0A6D2X3R7
    Related
    ENSPTRP00000089242.1
    Conserved Domains (6) summary
    pfam06650
    Location:2209 → 2452
    SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
    pfam12624
    Location:4 → 113
    Chorein_N; N-terminal region of Chorein or VPS13
    pfam16908
    Location:142 → 371
    VPS13; Vacuolar sorting-associated protein 13, N-terminal
    pfam16909
    Location:2766 → 2943
    VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal
    pfam16910
    Location:569 → 793
    VPS13_mid_rpt; Repeating coiled region of VPS13
    cl25572
    Location:2598 → 3062
    VPS13; Vacuolar sorting-associated protein 13, N-terminal

  4. XM_016960976.4 → XP_016816465.1  intermembrane lipid transfer protein VPS13A isoform X1

    UniProtKB/TrEMBL
    A0A2I3TA61, A0A2J8MRH7, A0A6D2W3Q9
    Conserved Domains (7) summary
    COG5043
    Location:4 → 2110
    MRS6; Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]
    pfam06650
    Location:2215 → 2458
    SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
    pfam09333
    Location:2952 → 3031
    ATG_C; Autophagy-related protein C terminal domain
    pfam12624
    Location:4 → 113
    Chorein_N; N-terminal region of Chorein or VPS13
    pfam16908
    Location:148 → 377
    VPS13; Vacuolar sorting-associated protein 13, N-terminal
    pfam16909
    Location:2772 → 2949
    VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal
    pfam16910
    Location:576 → 799
    VPS13_mid_rpt; Repeating coiled region of VPS13

  5. XM_016960981.4 → XP_016816470.1  intermembrane lipid transfer protein VPS13A isoform X5

    UniProtKB/TrEMBL
    A0A2I3RQS7
    Conserved Domains (7) summary
    COG5043
    Location:4 → 2110
    MRS6; Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]
    pfam06650
    Location:2215 → 2458
    SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
    pfam09333
    Location:2952 → 3031
    ATG_C; Autophagy-related protein C terminal domain
    pfam12624
    Location:4 → 113
    Chorein_N; N-terminal region of Chorein or VPS13
    pfam16908
    Location:148 → 377
    VPS13; Vacuolar sorting-associated protein 13, N-terminal
    pfam16909
    Location:2772 → 2949
    VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal
    pfam16910
    Location:576 → 799
    VPS13_mid_rpt; Repeating coiled region of VPS13

  6. XM_016960978.4 → XP_016816467.1  intermembrane lipid transfer protein VPS13A isoform X3

    UniProtKB/TrEMBL
    A0A2I3RQS7
    Conserved Domains (7) summary
    COG5043
    Location:4 → 2110
    MRS6; Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]
    pfam06650
    Location:2215 → 2458
    SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
    pfam09333
    Location:2952 → 3031
    ATG_C; Autophagy-related protein C terminal domain
    pfam12624
    Location:4 → 113
    Chorein_N; N-terminal region of Chorein or VPS13
    pfam16908
    Location:148 → 377
    VPS13; Vacuolar sorting-associated protein 13, N-terminal
    pfam16909
    Location:2772 → 2949
    VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal
    pfam16910
    Location:576 → 799
    VPS13_mid_rpt; Repeating coiled region of VPS13

  7. XM_063787782.1 → XP_063643852.1  intermembrane lipid transfer protein VPS13A isoform X8

    UniProtKB/TrEMBL
    A0A2I3RQS7

  8. XM_063787784.1 → XP_063643854.1  intermembrane lipid transfer protein VPS13A isoform X10

    UniProtKB/TrEMBL
    A0A2I3RQS7

  9. XM_063787783.1 → XP_063643853.1  intermembrane lipid transfer protein VPS13A isoform X9

    UniProtKB/TrEMBL
    A0A2I3RQS7

  10. XM_016960983.3 → XP_016816472.1  intermembrane lipid transfer protein VPS13A isoform X6

    UniProtKB/TrEMBL
    A0A2I3RQS7

RNA

  1. XR_010148689.1 RNA Sequence

  2. XR_010148692.1 RNA Sequence

  3. XR_010148694.1 RNA Sequence

  4. XR_010148690.1 RNA Sequence

  5. XR_010148693.1 RNA Sequence

  6. XR_010148695.1 RNA Sequence

Nucleotide Protein
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