GALNT17 polypeptide N-acetylgalactosaminyltransferase 17 [Pan troglodytes (chimpanzee)] - Gene

Summary

Gene symbol: GALNT17
Gene description: polypeptide N-acetylgalactosaminyltransferase 17
Locus tag: CK820_G0039705
See related: Ensembl:ENSPTRG00000019262
Gene type: protein coding
RefSeq status: MODEL
Organism: Pan troglodytes
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Also known as: WBSCR17
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 6

Exon count:: 11

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2)	6	NC_072404.2 (79755432..80336939)
RS_2023_04	previous assembly	NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1)	7	NC_072405.1 (76127837..76709071)

Chromosome 6 - NC_072404.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

D7S1407 (e-PCR)
- UniSTS:21527

GDB:3754866 (e-PCR)
- UniSTS:57115

SHGC-104886 (e-PCR)
- UniSTS:169019

GDB:1317364 (e-PCR)
- UniSTS:6466

SHGC-83093 (e-PCR)
- UniSTS:184651

SHGC-84166 (e-PCR)
- UniSTS:184654

STS-H15176 (e-PCR)
- UniSTS:44629

GDB:4585200 (e-PCR)
- UniSTS:21590

GDB:3778209 (e-PCR)
- UniSTS:22106

G17161 (e-PCR)
- UniSTS:82782

D7S2516 (e-PCR), detects polymorphism
- UniSTS:3429

GDB:4584959 (e-PCR)
- UniSTS:20840

G54788 (e-PCR)
- UniSTS:117871

WI-20075 (e-PCR)
- UniSTS:6027

D7S1979 (e-PCR)
- UniSTS:18851

D7S2270E (e-PCR)
- UniSTS:56741

RH65189 (e-PCR)
- UniSTS:91825

D7S1568 (e-PCR)
- UniSTS:42687

SHGC-153010 (e-PCR)
- UniSTS:177629

RH66296 (e-PCR)
- UniSTS:7649

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables polypeptide N-acetylgalactosaminyltransferase activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in protein O-linked glycosylation	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in Golgi apparatus	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: putative polypeptide N-acetylgalactosaminyltransferase-like protein 3; polypeptide N-acetylgalactosaminyltransferase 17

Names: Williams-Beuren syndrome chromosome region 17

XP_016813052.2

EC 2.4.1.41

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

NC_072404.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Range

79755432..80336939

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_016957563.4 → XP_016813052.2 polypeptide N-acetylgalactosaminyltransferase 17

UniProtKB/TrEMBL

A0A2J8KCQ5

Conserved Domains (2) summary

cd02510
Location:155 → 454

pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans

cd00161
Location:467 → 593

RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...