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SPDEF SAM pointed domain containing ETS transcription factor [ Pan troglodytes (chimpanzee) ]

Gene ID: 462627, updated on 17-Aug-2024

Summary

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Official Symbol
SPDEFprovided by VGNC
Official Full Name
SAM pointed domain containing ETS transcription factorprovided by VGNC
Primary source
VGNC:VGNC:3710
Locus tag
CK820_G0007032
See related
Ensembl:ENSPTRG00000018065
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 5 NC_072403.2 (40410607..40419790, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 6 NC_072404.1 (40406761..40418706, complement)

Chromosome 5 - NC_072403.2Genomic Context describing neighboring genes Neighboring gene ribosomal protein S10 Neighboring gene protein kinase C and casein kinase substrate in neurons 1 Neighboring gene interferon-induced transmembrane protein 3-like Neighboring gene inflammation and lipid regulator with UBA-like and NBR1-like domains Neighboring gene large ribosomal subunit protein uL30-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SAM pointed domain-containing Ets transcription factor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072403.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    40410607..40419790 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016955276.4 → XP_016810765.2  SAM pointed domain-containing Ets transcription factor isoform X2

    UniProtKB/TrEMBL
    A0A2I3TV88, A0A2J8NYU3, A0A6D2Y5U8

  2. XM_016955275.4 → XP_016810764.2  SAM pointed domain-containing Ets transcription factor isoform X1

    UniProtKB/TrEMBL
    A0A2J8NYU6, A0A6D2W887, H2QSV0
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
Research Materials