NUP50 nucleoporin 50 [Pan troglodytes (chimpanzee)] - Gene

Summary

Gene symbol: NUP50
Gene description: nucleoporin 50
Locus tag: CK820_G0027412
See related: Ensembl:ENSPTRG00000044410
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Pan troglodytes
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 23

Exon count:: 10

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2)	23	NC_086016.1 (47154929..47179447)
RS_2023_04	previous assembly	NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1)	22	NC_072420.1 (40187326..40208673)

Chromosome 23 - NC_086016.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

D12S2114 (e-PCR)
- UniSTS:23136

PMC166143P11 (e-PCR)
- UniSTS:271561

RH26205 (e-PCR)
- UniSTS:87774

Gene Ontology Provided by RefSeq

Process	Evidence Code	Pubs
involved_in protein import into nucleus	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
part_of nuclear pore	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: nuclear pore complex protein Nup50

Names: nucleoporin 50 kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001280258.1 → NP_001267187.1 nuclear pore complex protein Nup50

See identical proteins and their annotated locations for NP_001267187.1

Status: PROVISIONAL

Source sequence(s)

AK306048

UniProtKB/TrEMBL

A0A2J8LMM4, G2HH34

Related

ENSPTRP00000068401.1, ENSPTRT00000089803.1

Conserved Domains (2) summary

cd13170
Location:322 → 438

RanBD_NUP50; Nucleoporin 50 Ran-binding domain

pfam08911
Location:2 → 36

NUP50; NUP50 (Nucleoporin 50 kDa)

RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

NC_086016.1 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Range

47154929..47179447

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_009438581.5 → XP_009436856.1 nuclear pore complex protein Nup50 isoform X1

See identical proteins and their annotated locations for XP_009436856.1

UniProtKB/TrEMBL

A0A2I3RUL0, A0A2J8LML7, A0A6D2WH62, K7AZ41

Conserved Domains (2) summary

cd13170
Location:350 → 466

RanBD_NUP50; Nucleoporin 50 Ran-binding domain

pfam08911
Location:3 → 67

NUP50; NUP50 (Nucleoporin 50 kDa)
XM_016938796.4 → XP_016794285.1 nuclear pore complex protein Nup50 isoform X1

UniProtKB/TrEMBL

A0A2I3RUL0, A0A2J8LML7, A0A6D2WH62, K7AZ41

Conserved Domains (2) summary

cd13170
Location:350 → 466

RanBD_NUP50; Nucleoporin 50 Ran-binding domain

pfam08911
Location:3 → 67

NUP50; NUP50 (Nucleoporin 50 kDa)
XM_054675383.2 → XP_054531358.1 nuclear pore complex protein Nup50 isoform X1

UniProtKB/TrEMBL

A0A2I3RUL0, A0A2J8LML7, A0A6D2WH62, K7AZ41