CMC1 C-X9-C motif containing 1 [Pan troglodytes (chimpanzee)] - Gene

Summary

Official Symbol: CMC1provided by VGNC
Official Full Name: C-X9-C motif containing 1provided by VGNC
Primary source: VGNC:VGNC:9667
Locus tag: CK820_G0008956
See related: Ensembl:ENSPTRG00000014706
Gene type: protein coding
RefSeq status: MODEL
Organism: Pan troglodytes
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 2

Exon count:: 12

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2)	2	NC_086015.1 (32223885..32302655)
RS_2023_04	previous assembly	NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1)	3	NC_072401.1 (32224308..32302326)

Chromosome 2 - NC_086015.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

SHGC-105227 (e-PCR)
- UniSTS:169266

RH104069 (e-PCR)
- UniSTS:98394

RH122199 (e-PCR)
- UniSTS:134759

STS-H03343 (e-PCR)
- UniSTS:36202

RH91098 (e-PCR)
- UniSTS:86962

G32867 (e-PCR)
- UniSTS:117446

A009V06 (e-PCR)
- UniSTS:15870

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Component	Evidence Code	Pubs
located_in mitochondrion	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: COX assembly mitochondrial protein homolog

Names: C-x(9)-C motif containing 1; COX assembly mitochondrial protein 1 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

NC_086015.1 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Range

32223885..32302655

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_063805534.1 → XP_063661604.1 COX assembly mitochondrial protein homolog isoform X4

UniProtKB/TrEMBL

A0A2I3SWW7, G2HJC1
XM_024355230.3 → XP_024210998.1 COX assembly mitochondrial protein homolog isoform X5

UniProtKB/TrEMBL

A0A2I3RT15, A0A2J8NPP9, A0A6D2X751

Conserved Domains (1) summary

pfam08583
Location:7 → 57

Cmc1; Cytochrome c oxidase biogenesis protein Cmc1 like
XM_024355231.3 → XP_024210999.1 COX assembly mitochondrial protein homolog isoform X4

UniProtKB/TrEMBL

A0A2I3SWW7, G2HJC1

Conserved Domains (1) summary

pfam08583
Location:1 → 65

Cmc1; Cytochrome c oxidase biogenesis protein Cmc1 like
XM_516338.9 → XP_516338.2 COX assembly mitochondrial protein homolog isoform X3

See identical proteins and their annotated locations for XP_516338.2

UniProtKB/TrEMBL

A0A2I3SWW7, A0A2J8NPP4, A0A6D2X372, H2QM80

Related

ENSPTRP00000025368.5

Conserved Domains (1) summary

pfam08583
Location:19 → 87

Cmc1; Cytochrome c oxidase biogenesis protein Cmc1 like
XM_063805533.1 → XP_063661603.1 COX assembly mitochondrial protein homolog isoform X4

UniProtKB/TrEMBL

A0A2I3SWW7, G2HJC1
XM_024355229.3 → XP_024210997.1 COX assembly mitochondrial protein homolog isoform X4

UniProtKB/TrEMBL

A0A2I3SWW7, G2HJC1

Conserved Domains (1) summary

pfam08583
Location:1 → 65

Cmc1; Cytochrome c oxidase biogenesis protein Cmc1 like
XM_016940091.4 → XP_016795580.1 COX assembly mitochondrial protein homolog isoform X1
XM_063805532.1 → XP_063661602.1 COX assembly mitochondrial protein homolog isoform X2