U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

NFIA_099410 polygalacturonase, putative [ Aspergillus fischeri NRRL 181 ]

Gene ID: 4588514, updated on 17-May-2024

Summary

Go to the top of the page Help
Gene symbol
NFIA_099410
Gene description
polygalacturonase, putative
Primary source
FungiDB:NFIA_099410
Locus tag
NFIA_099410
See related
VEuPathDB:NFIA_099410
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Aspergillus fischeri NRRL 181 (strain: NRRL 181, type-material: culture from neotype of Aspergillus fischeri)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus; Aspergillus subgen. Fumigati
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See NFIA_099410 in Genome Data Viewer
Location:
chromosome: Unknown
Exon count:
2

NW_001509764.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene hypothetical protein Neighboring gene glycosyltransferase family 28, putative Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_001509764.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in pectin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
polygalacturonase, putative
XP_001262203.1
  • encoded by transcript NFIA_099410A
    predicted by EVM

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_001509764.1 Reference assembly

    Range
    1658197..1659670 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001262202.1 → XP_001262203.1  polygalacturonase, putative [Aspergillus fischeri NRRL 181]

    See identical proteins and their annotated locations for XP_001262203.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    A1DBR6
    Conserved Domains (2) summary
    pfam00295
    Location:144 → 469
    Glyco_hydro_28; Glycosyl hydrolases family 28
    cl19188
    Location:197 → 460
    PL-6; Polysaccharide Lyase Family 6
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials