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ATG4D autophagy related 4D cysteine peptidase [ Pan troglodytes (chimpanzee) ]

Gene ID: 455708, updated on 17-Aug-2024

Summary

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Official Symbol
ATG4Dprovided by VGNC
Official Full Name
autophagy related 4D cysteine peptidaseprovided by VGNC
Primary source
VGNC:VGNC:10157
Locus tag
CK820_G0026521
See related
Ensembl:ENSPTRG00000010475
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 20
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 20 NC_072418.2 (13270123..13279882)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 19 NC_072417.1 (13270191..13279925)

Chromosome 20 - NC_072418.2Genomic Context describing neighboring genes Neighboring gene kelch like ECH associated protein 1 Neighboring gene sphingosine-1-phosphate receptor 5 Neighboring gene U7 small nuclear RNA Neighboring gene KRI1 homolog Neighboring gene cyclin dependent kinase inhibitor 2D Neighboring gene adaptor related protein complex 1 subunit mu 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein-phosphatidylethanolamide deconjugating activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cysteine protease ATG4D
Names
APG4 autophagy 4 homolog D
ATG4 autophagy related 4 homolog D
XP_016790485.2
XP_016790487.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072418.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    13270123..13279882
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016934998.4 → XP_016790487.1  cysteine protease ATG4D isoform X2

    UniProtKB/TrEMBL
    A0A2J8LWD7, A0A6D2W6G8, H2QFC0

  2. XM_016934996.3 → XP_016790485.2  cysteine protease ATG4D isoform X1

    UniProtKB/TrEMBL
    A0A2J8LWD7, A0A6D2W6G8, H2QFC0, K7C081
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials