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RPGRIP1L RPGRIP1 like [ Pan troglodytes (chimpanzee) ]

Gene ID: 454089, updated on 3-Apr-2024

Summary

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Official Symbol
RPGRIP1Lprovided by VGNC
Official Full Name
RPGRIP1 likeprovided by VGNC
Primary source
VGNC:VGNC:10368
Locus tag
CK820_G0016696
See related
Ensembl:ENSPTRG00000008117
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See RPGRIP1L in Genome Data Viewer
Location:
chromosome: 16
Exon count:
28
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 18 NC_072416.2 (51555501..51673756, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 16 NC_072414.1 (51555400..51656619, complement)

Chromosome 18 - NC_072416.2Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene RB transcriptional corepressor like 2 Neighboring gene AKT interacting protein Neighboring gene FTO alpha-ketoglutarate dependent dioxygenase Neighboring gene uncharacterized LOC129137341 Neighboring gene iroquois homeobox 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables thromboxane A2 receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in non-motile cilium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retinal rod cell development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in photoreceptor connecting cilium IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein fantom

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072416.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    51555501..51673756 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063797133.1 → XP_063653203.1  protein fantom isoform X1

  2. XM_001166735.7 → XP_001166735.4  protein fantom isoform X3

  3. XM_054668400.2 → XP_054524375.1  protein fantom isoform X4

  4. XM_009430803.5 → XP_009429078.4  protein fantom isoform X2

  5. XM_054668398.1 → XP_054524373.1  protein fantom isoform X2

  6. XM_063797134.1 → XP_063653204.1  protein fantom isoform X5

    UniProtKB/TrEMBL
    A0A2J8MWS6
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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