XYLT1 xylosyltransferase 1 [Pan troglodytes (chimpanzee)] - Gene

Summary

Official Symbol: XYLT1provided by VGNC
Official Full Name: xylosyltransferase 1provided by VGNC
Primary source: VGNC:VGNC:5958
Locus tag: CK820_G0050393
See related: Ensembl:ENSPTRG00000007819
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Pan troglodytes
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Also known as: XT-I
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 16

Exon count:: 12

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2)	18	NC_072416.2 (19609946..19977084, complement)
RS_2023_04	previous assembly	NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1)	16	NC_072414.1 (19609952..19977087, complement)

Chromosome 18 - NC_072416.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Markers

SHGC-6763 (e-PCR)
- UniSTS:3849

D16S3103 (e-PCR), detects polymorphism
- UniSTS:50953

RH123101 (e-PCR)
- UniSTS:135481

RH98909 (e-PCR)
- UniSTS:84820

D16S3017 (e-PCR)
- UniSTS:75102

RH48694 (e-PCR)
- UniSTS:8050

G17888 (e-PCR)
- UniSTS:74668

RH121453 (e-PCR)
- UniSTS:134582

SHGC-154898 (e-PCR)
- UniSTS:182986

RH48339 (e-PCR)
- UniSTS:44506

SHGC-142101 (e-PCR)
- UniSTS:171251

RH48006 (e-PCR)
- UniSTS:38900

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables protein xylosyltransferase activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in chondroitin sulfate proteoglycan biosynthetic process	IEA Inferred from Electronic Annotation more info	PubMed
involved_in heparan sulfate proteoglycan biosynthetic process	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: xylosyltransferase 1

Names: UDP-D-xylose:proteoglycan core protein beta-D-xylosyltransferase; peptide O-xylosyltransferase 1; xylosyltransferase I

NP_001032366.1

EC 2.4.2.26

XP_009428658.3

EC 2.4.2.26

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001037289.1 → NP_001032366.1 xylosyltransferase 1 precursor

See identical proteins and their annotated locations for NP_001032366.1

Status: PROVISIONAL

Source sequence(s)

AJ866718

UniProtKB/Swiss-Prot

Q5QQ57

UniProtKB/TrEMBL

A0A2J8J661, A0A6D2XTL9, H2QAN0

Related

ENSPTRP00000060146.2, ENSPTRT00000073395.2

Conserved Domains (2) summary

pfam02485
Location:314 → 566

Branch; Core-2/I-Branching enzyme

pfam12529
Location:599 → 779

Xylo_C; Xylosyltransferase C terminal

RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

NC_072416.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Range

19609946..19977084 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)