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ERCC4 ERCC excision repair 4, endonuclease catalytic subunit [ Pan troglodytes (chimpanzee) ]

Gene ID: 453935, updated on 29-Mar-2024

Summary

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Official Symbol
ERCC4provided by VGNC
Official Full Name
ERCC excision repair 4, endonuclease catalytic subunitprovided by VGNC
Primary source
VGNC:VGNC:9004
Locus tag
CK820_G0046672
See related
Ensembl:ENSPTRG00000007789
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See ERCC4 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 18 NC_072416.2 (16562066..16594446)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 16 NC_072414.1 (16562144..16594452)

Chromosome 18 - NC_072416.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104002525 Neighboring gene uncharacterized LOC129137478 Neighboring gene uncharacterized LOC107968793 Neighboring gene small ribosomal subunit protein eS26-like Neighboring gene uncharacterized LOC134808738 Neighboring gene uncharacterized LOC134808739 Neighboring gene myocardin related transcription factor B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables damaged DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded DNA endodeoxyribonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in double-strand break repair via homologous recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nucleotide-excision repair involved in interstrand cross-link repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in resolution of meiotic recombination intermediates IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nucleotide-excision repair factor 1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA repair endonuclease XPF
Names
excision repair cross-complementation group 4
excision repair cross-complementing rodent repair deficiency, complementation group 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072416.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    16562066..16594446
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_510831.8 → XP_510831.2  DNA repair endonuclease XPF

    See identical proteins and their annotated locations for XP_510831.2

    UniProtKB/TrEMBL
    A0A2J8JL34, A0A6D2XHV1, H2RAD0
    Related
    ENSPTRP00000053757.4
    Conserved Domains (1) summary
    TIGR00596
    Location:97 → 907
    rad1; DNA repair protein (rad1)
Nucleotide Protein
Heading Accession and Version

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Research Materials