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tmem30c transmembrane protein 30C [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 448286, updated on 25-Jan-2024

Summary

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Official Symbol
tmem30cprovided by Xenbase
Official Full Name
transmembrane protein 30Cprovided by Xenbase
Primary source
Xenbase:XB-GENE-946884
See related
Ensembl:ENSXETG00000011857
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
tmem30b; tmem30cp
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Genomic context

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See tmem30c in Genome Data Viewer
Location:
chromosome: 2
Exon count:
7
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (28298711..28309338, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (30743321..30753379)

Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene zona pellucida sperm-binding protein 4 Neighboring gene zona pellucida glycoprotein 4, gene 2 Neighboring gene cms1 ribosomal small subunit homolog Neighboring gene filamin A interacting protein 1-like Neighboring gene TBC1 domain family member 23

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC89061

Gene Ontology Provided by Xenbase

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
transmembrane protein 30C
Names
transmembrane protein 30C, pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001005809.1 → NP_001005809.1  transmembrane protein 30C

    See identical proteins and their annotated locations for NP_001005809.1

    Status: PROVISIONAL

    Source sequence(s)
    BC075358
    UniProtKB/TrEMBL
    F7ADD6, Q6DJ27
    Related
    ENSXETP00000025911.3, ENSXETT00000025911.5
    Conserved Domains (1) summary
    pfam03381
    Location:61 → 345
    CDC50; LEM3 (ligand-effect modulator 3) family / CDC50 family

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    28298711..28309338 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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