tent2.S terminal nucleotidyltransferase 2 S homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: tent2.S
Official Full Name: terminal nucleotidyltransferase 2 S homeolog
Primary source: Xenbase:XB-GENE-1217415
Locus tag: XELAEV_18010921mg
See related: EnsemblRapid:ENSXLAG00005005489
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: gld2; papd4; xgld2; gld2-A; xgld-2; papd4-a; papd4-b; papd4.L; papd4.S; tent2-a
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Genomic context

Location:: chromosome: 1S

Exon count:: 14

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	1S	NC_054372.1 (174401681..174424480)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	1S	NC_030725.1 (158397258..158420152)

Chromosome 1S - NC_054372.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables ATP binding	IEA Inferred from Electronic Annotation more info
enables RNA uridylyltransferase activity	IEA Inferred from Electronic Annotation more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables nucleotidyltransferase activity	IEA Inferred from Electronic Annotation more info
enables poly(A) RNA polymerase activity	IEA Inferred from Electronic Annotation more info
enables poly(A) RNA polymerase activity	ISS Inferred from Sequence or Structural Similarity more info
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed
enables transferase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within RNA 3' uridylation	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within cell differentiation	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within mRNA 3'-end processing	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within mRNA processing	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within negative regulation of miRNA catabolic process	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within oogenesis	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: poly(A) RNA polymerase GLD2-A

Names: PAP associated domain containing 4 L homeolog; PAP associated domain containing 4 S homeolog; PAP-associated domain-containing protein 4-A

NP_001087892.1

EC 2.7.7.19

XP_041431779.1

EC 2.7.7.19

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001094423.1 → NP_001087892.1 poly(A) RNA polymerase GLD2-A

See identical proteins and their annotated locations for NP_001087892.1

Status: PROVISIONAL

Source sequence(s)

BC082438

UniProtKB/Swiss-Prot

Q641A1

UniProtKB/TrEMBL

A0A974DWB1

Related

ENSXLAP00005016215.1, ENSXLAT00005016503.1

Conserved Domains (2) summary

cd05402
Location:203 → 320

NT_PAP_TUTase; Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases

pfam03828
Location:408 → 462

PAP_assoc; Cid1 family poly A polymerase

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054372.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

174401681..174424480

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_041575845.1 → XP_041431779.1 poly(A) RNA polymerase GLD2-A isoform X1

UniProtKB/TrEMBL

A0A8J1LR85

Conserved Domains (1) summary

COG5260
Location:2 → 232

TRF4; DNA polymerase sigma [Replication, recombination and repair]