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ndel1.S nudE neurodevelopment protein 1 like 1 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 447537, updated on 17-Aug-2024

Summary

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Official Symbol
ndel1.S
Official Full Name
nudE neurodevelopment protein 1 like 1 S homeolog
Primary source
Xenbase:XB-GENE-6253763
Locus tag
XELAEV_18046827mg
See related
EnsemblRapid:ENSXLAG00005015475
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
eopa; ndel1; nudel; mitap1; ndel1-a; ndel1-b
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Genomic context

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Location:
chromosome: 9_10S
Exon count:
13
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10S NC_054388.1 (45152361..45169823, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10S NC_030741.1 (38470852..38488309, complement)

Chromosome 9_10S - NC_054388.1Genomic Context describing neighboring genes Neighboring gene bMERB domain containing 1-like S homeolog Neighboring gene myosin, heavy chain 10, non-muscle S homeolog Neighboring gene ring finger protein 222 S homeolog Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC83866

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables microtubule binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within lysosome localization ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within positive regulation of ruffle assembly ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
located_in centrosome IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
  
located_in microtubule IEA
Inferred from Electronic Annotation
more info
  
located_in spindle IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
nuclear distribution protein nudE-like 1-B
Names
nudE neurodevelopment protein 1-like 1
nudE nuclear distribution E homolog-like 1
nudE nuclear distribution gene E homolog-like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001094244.1 → NP_001087713.1  nuclear distribution protein nudE-like 1-B

    See identical proteins and their annotated locations for NP_001087713.1

    Status: PROVISIONAL

    Source sequence(s)
    BC081127
    UniProtKB/Swiss-Prot
    Q66IZ7
    UniProtKB/TrEMBL
    A0A974BU20
    Related
    ENSXLAP00005045499.1, ENSXLAT00005046598.1
    Conserved Domains (2) summary
    pfam04880
    Location:135 → 287
    NUDE_C; NUDE protein, C-terminal conserved region
    cl03075
    Location:64 → 150
    GrpE; nucleotide exchange factor GrpE

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054388.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    45152361..45169823 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041577817.1 → XP_041433751.1  nuclear distribution protein nudE-like 1-B isoform X2

    UniProtKB/TrEMBL
    A0A1L8EN91, A0A974BTQ2
    Related
    ENSXLAP00005045516.1, ENSXLAT00005046615.1
    Conserved Domains (2) summary
    COG1196
    Location:13 → 195
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam04880
    Location:135 → 287
    NUDE_C; NUDE protein, C-terminal conserved region

  2. XM_041577818.1 → XP_041433752.1  nuclear distribution protein nudE-like 1-B isoform X2

    UniProtKB/TrEMBL
    A0A1L8EN91, A0A974BTQ2
    Conserved Domains (2) summary
    COG1196
    Location:13 → 195
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam04880
    Location:135 → 287
    NUDE_C; NUDE protein, C-terminal conserved region

  3. XM_041577816.1 → XP_041433750.1  nuclear distribution protein nudE-like 1-B isoform X1

    UniProtKB/TrEMBL
    A0A8J1LYD6
    Conserved Domains (1) summary
    COG1196
    Location:18 → 200
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  4. XM_041577819.1 → XP_041433753.1  nuclear distribution protein nudE-like 1-B isoform X3

    UniProtKB/TrEMBL
    A0A8J1LW71
    Related
    ENSXLAP00005045491.1, ENSXLAT00005046590.1
    Conserved Domains (1) summary
    COG1196
    Location:13 → 195
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q66IZ7.1 GenPept UniProtKB/Swiss-Prot:Q66IZ7

Gene LinkOut

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