U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ubqln1.L ubiquilin 1 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 446997, updated on 11-Apr-2024

Summary

Go to the top of the page Help
Official Symbol
ubqln1.L
Official Full Name
ubiquilin 1 L homeolog
Primary source
Xenbase:XB-GENE-986031
Locus tag
XELAEV_18006928mg
See related
EnsemblRapid:ENSXLAG00005036307
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
da41; dsk2; ubqn; xdrp1; plic-1; ubqln1; ubqln2
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See ubqln1.L in Genome Data Viewer
Location:
chromosome: 1L
Exon count:
11
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1L NC_054371.1 (145065384..145078800)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1L NC_030724.1 (132179063..132192818)

Chromosome 1L - NC_054371.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108705424 Neighboring gene mitochondrial ribosomal protein S18C L homeolog Neighboring gene G kinase anchoring protein 1 L homeolog Neighboring gene chromosome 1 C15orf40 homolog L homeolog Neighboring gene idnK, gluconokinase homolog (E. coli) L homeolog Neighboring gene FERM domain containing 3 L homeolog

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Wnt signalling regulates paxillin ubiquitination essential for mesodermal cell motility. Iioka H, et al. Nat Cell Biol, 2007 Jul. PMID 17558393
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

Clone Names

  • MGC81673

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables polyubiquitin modification-dependent protein binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within autophagosome assembly IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of macroautophagy IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in autophagosome IEA
Inferred from Electronic Annotation
more info
  
located_in cytosol IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
ubiquilin 1 L homeolog
Names
ubiquilin 2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001093639.1 → NP_001087108.1  ubiquilin 1 L homeolog

    See identical proteins and their annotated locations for NP_001087108.1

    Status: PROVISIONAL

    Source sequence(s)
    BC077987
    UniProtKB/TrEMBL
    A0A974E1D2, Q6DCM1
    Related
    ENSXLAP00005108659.1, ENSXLAT00005110821.1
    Conserved Domains (4) summary
    smart00727
    Location:366 → 398
    STI1; Heat shock chaperonin-binding motif
    cd01808
    Location:19 → 89
    hPLIC_N; Ubiquitin-like domain of hPLIC-1 and hPLIC2
    smart00213
    Location:19 → 89
    UBQ; Ubiquitin homologues
    cd14399
    Location:521 → 560
    UBA_PLICs; UBA domain of eukaryotic protein linking integrin-associated protein (IAP, also known as CD47) with cytoskeleton (PLIC) proteins

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054371.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    145065384..145078800
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.