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vps29.S VPS29 retromer complex component S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 444173, updated on 18-Sep-2024

Summary

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Official Symbol
vps29.S
Official Full Name
VPS29 retromer complex component S homeolog
Primary source
Xenbase:XB-GENE-967958
Locus tag
XELAEV_18010655mg
See related
EnsemblRapid:ENSXLAG00005008531
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
vps29
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Genomic context

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Location:
chromosome: 1S
Exon count:
5
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1S NC_054372.1 (151022809..151030112, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1S NC_030725.1 (135245655..135252868, complement)

Chromosome 1S - NC_054372.1Genomic Context describing neighboring genes Neighboring gene actin related protein 2/3 complex subunit 3 S homeolog Neighboring gene uncharacterized LOC108706441 Neighboring gene PTC7 protein phosphatase homolog S homeolog Neighboring gene uncharacterized LOC121399498 Neighboring gene hydrogen voltage gated channel 1 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
acts_upstream_of_or_within intracellular protein transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within protein transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within retrograde transport, endosome to Golgi IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in endosome IEA
Inferred from Electronic Annotation
more info
  
located_in endosome membrane IEA
Inferred from Electronic Annotation
more info
  
part_of retromer complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
vacuolar protein sorting-associated protein 29
Names
vacuolar protein sorting 29 homolog
vesicle protein sorting 29
XP_041436308.1
XP_041436309.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001092277.1 → NP_001085746.1  vacuolar protein sorting-associated protein 29

    See identical proteins and their annotated locations for NP_001085746.1

    Status: PROVISIONAL

    Source sequence(s)
    BC097520
    UniProtKB/Swiss-Prot
    Q6GP62
    UniProtKB/TrEMBL
    A0A1L8I129, A0A974DUL0, A0A974E249
    Conserved Domains (1) summary
    cd07394
    Location:2 → 179
    MPP_Vps29; Homo sapiens Vps29 and related proteins, metallophosphatase domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054372.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    151022809..151030112 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041580375.1 → XP_041436309.1  vacuolar protein sorting-associated protein 29 isoform X2

    UniProtKB/Swiss-Prot
    Q6GP62
    UniProtKB/TrEMBL
    A0A1L8I129, A0A974DUL0, A0A974E249
    Related
    ENSXLAP00005024819.1, ENSXLAT00005025528.1
    Conserved Domains (1) summary
    cd07394
    Location:2 → 179
    MPP_Vps29; Homo sapiens Vps29 and related proteins, metallophosphatase domain

  2. XM_041580374.1 → XP_041436308.1  vacuolar protein sorting-associated protein 29 isoform X1

    UniProtKB/TrEMBL
    A0A1L8HQR0, A0A974DUY1, A0A974E249
    Related
    ENSXLAP00005024825.1, ENSXLAT00005025534.1
    Conserved Domains (1) summary
    cd07394
    Location:6 → 183
    MPP_Vps29; Homo sapiens Vps29 and related proteins, metallophosphatase domain
Nucleotide Protein Strain
Heading Accession and Version

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