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sec63.S SEC63 homolog, protein translocation regulator S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 443902, updated on 11-Apr-2024

Summary

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Official Symbol
sec63.S
Official Full Name
SEC63 homolog, protein translocation regulator S homeolog
Primary source
Xenbase:XB-GENE-17336998
Locus tag
XELAEV_18029298mg
See related
EnsemblRapid:ENSXLAG00005004610
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
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Genomic context

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See sec63.S in Genome Data Viewer
Location:
chromosome: 5S
Exon count:
21
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 5S NC_054380.1 (65242055..65268430)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 5S NC_030733.1 (61109880..61136541)

Chromosome 5S - NC_054380.1Genomic Context describing neighboring genes Neighboring gene nuclear receptor subfamily 2 group E member 1 S homeolog Neighboring gene osteopetrosis associated transmembrane protein 1 S homeolog Neighboring gene Scm polycomb group protein like 4 S homeolog Neighboring gene sine oculis binding protein homolog S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC80164

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables protein transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within SRP-dependent cotranslational protein targeting to membrane IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within post-translational protein targeting to endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within protein transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of Sec62/Sec63 complex IEA
Inferred from Electronic Annotation
more info
  
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
SEC63 homolog, protein translocation regulator S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001092007.1 → NP_001085476.1  SEC63 homolog, protein translocation regulator S homeolog

    See identical proteins and their annotated locations for NP_001085476.1

    Status: PROVISIONAL

    Source sequence(s)
    BC072820
    UniProtKB/TrEMBL
    A0A974CTN6, A0A974CV34, Q6GQC5
    Related
    ENSXLAP00005013812.1, ENSXLAT00005013994.1
    Conserved Domains (3) summary
    smart00611
    Location:209 → 711
    SEC63; Domain of unknown function in Sec63p, Brr2p and other proteins
    pfam00226
    Location:104 → 162
    DnaJ; DnaJ domain
    pfam14797
    Location:563 → 629
    SEEEED; Serine-rich region of AP3B1, clathrin-adaptor complex

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054380.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    65242055..65268430
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials