U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

pRL90164 putative secretion/processing protein [ Rhizobium leguminosarum bv. viciae 3841 ]

Gene ID: 4398868, discontinued on 6-Feb-2015
  • All Gene records for this genome have been discontinued due to a change in scope for prokaryotic genomes in Gene. At the time this Gene record was discontinued, the RefSeq genome was re-annotated with the following features at this location:

Summary

Go to the top of the page Help
Gene symbol
pRL90164
Gene description
putative secretion/processing protein
Locus tag
pRL90164
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rhizobium leguminosarum bv. viciae 3841 (strain: 3841, biovar: viciae 3841)
Lineage
Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
plasmid: pRL9
Sequence:
NC_008379.1 (180013..182157)

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_008379.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Miscellaneous features

  • Loc: 180037-180414 Pfam match to entry PF03412.4 Peptidase_C39 inference = protein motif:Pfam:PF03412.4
  • Loc: 180466-181296 Pfam match to entry PF00664.10 ABC_membrane inference = protein motif:Pfam:PF00664.10
  • Loc: 180493-180561, ~, 180589-180657, ~, 180823-180891, ~, 180901-180969, ~, 181192-181260 5 probable transmembrane helices predicted at aa 161-183, 193-215, 271-293,297-319 and 394-416 inference = protein motif:TMHMM:2.0
  • Loc: 181510-182064 Pfam match to entry PF00005.11 ABC_tran inference = protein motif:Pfam:PF00005.11

General protein information

Go to the top of the page Help
Names
putative secretion/processing protein
YP_765453.1
  • similarity:fasta; SWALL:CYAB_BORPE (SWALL:P18770); Bordetella pertussis; cyclolysin secretion/processing ATP-binding protein cyab; name=cyab; orderedlocusnames=bp0761; length 712 aa; 705 aa overlap; query 7-709 aa; subject 14-707 aa
    similarity:fasta; SWALL:Q6QW99 (EMBL:AY523973); Azospirillum brasilense; secretion ATP-binding protein-like protein; orfnames=prhico002; length 758 aa; 711 aa overlap; query 7-714 aa; subject 33-742 aa

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_008379.1 Reference assembly

    Range
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_765453.1 putative secretion/processing protein [Rhizobium leguminosarum bv. viciae 3841]

    Status: PROVISIONAL

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.