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LOC4352583 mitochondrial import inner membrane translocase subunit Tim9-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4352583, updated on 6-Jun-2024

Summary

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Gene symbol
LOC4352583
Gene description
mitochondrial import inner membrane translocase subunit Tim9-like
Locus tag
OSNPB_120571200
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
TIM9; OsJ_36586
Expression
Ubiquitous expression in flower buds (RPKM 84.2), flowers (RPKM 65.7) and 6 other tissues See more
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Genomic context

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See LOC4352583 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
2
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (23516652..23518445)

Chromosome 12 - NC_029267.1Genomic Context describing neighboring genes Neighboring gene metallothionein-like protein 4B Neighboring gene metallothionein-like protein 4C Neighboring gene uncharacterized LOC4352584 Neighboring gene uncharacterized LOC9269708

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029267.1 Chromosome 12 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
mitochondrial import inner membrane translocase subunit Tim9
Names
LOC_Os12g38310

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001423590.1 → NP_001410519.1  mitochondrial import inner membrane translocase subunit Tim9

    Status: VALIDATED

    Source sequence(s)
    AK120784
    UniProtKB/Swiss-Prot
    Q0IMG2, Q2QNC2, Q9XGX7
    UniProtKB/TrEMBL
    A6MZE3, B8BML4

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029267.1 Reference IRGSP-1.0 Primary Assembly

    Range
    23516652..23518445
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015764752.2 → XP_015620238.1  mitochondrial import inner membrane translocase subunit Tim9

    UniProtKB/Swiss-Prot
    Q9XGX7
    Conserved Domains (1) summary
    pfam02953
    Location:23 → 82
    zf-Tim10_DDP; Tim10/DDP family zinc finger
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9XGX7.2 GenPept UniProtKB/Swiss-Prot:Q9XGX7

Gene LinkOut

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