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LOC4351769 B-box zinc finger protein 23 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4351769, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4351769
Gene description
B-box zinc finger protein 23
Locus tag
OSNPB_120209200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in leaves after flowering (RPKM 7.1), leaves before flowering (RPKM 4.1) and 4 other tissues See more
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Genomic context

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Location:
chromosome: 12
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (5733507..5736300)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (5699767..5702426)

Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein ycf45 Neighboring gene uncharacterized LOC4351768 Neighboring gene protein STICHEL Neighboring gene uncharacterized protein At4g10930

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in photomorphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
B-box zinc finger protein 23
Names
Os12g0209200

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

    Range
    5733507..5736300
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015763033.3 → XP_015618519.1  B-box zinc finger protein 23

    UniProtKB/TrEMBL
    A2ZIZ5, Q0IPF3, Q2QW41
    Conserved Domains (1) summary
    smart00336
    Location:5 → 47
    BBOX; B-Box-type zinc finger
Nucleotide Protein
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