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LOC4351379 MYB transcription factor 69 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4351379, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4351379
Gene description
MYB transcription factor 69
Locus tag
OSNPB_120125000
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
myb
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
chromosome: 12
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (1224705..1226102, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (1200476..1201989, complement)

Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene mini zinc finger protein 2 Neighboring gene uncharacterized LOC4351377 Neighboring gene uncharacterized LOC4351378 Neighboring gene uncharacterized LOC107279732 Neighboring gene uncharacterized LOC9267002

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. The electronic Plant Gene Register. . Plant Physiol, 1997 May. PMID 9159957, Free PMC Article
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in response to auxin IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
MYB transcription factor 69
Names
Os12g0125000
myb factor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

    Range
    1224705..1226102 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015763529.3 → XP_015619015.1  MYB transcription factor 69

    UniProtKB/TrEMBL
    A0A8J8YAM0, A2ZHN4, A3CEI9, O04109, Q0IQF4, Q2QYC1
    Conserved Domains (1) summary
    PLN03212
    Location:5 → 116
    PLN03212; Transcription repressor MYB5; Provisional
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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