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LOC4350912 patatin-like protein 1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4350912, updated on 18-Sep-2024

Summary

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Gene symbol
LOC4350912
Gene description
patatin-like protein 1
Locus tag
OSNPB_110614400
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in roots before flowering (RPKM 15.7), flower buds (RPKM 12.5) and 5 other tissues See more
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Genomic context

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Location:
chromosome: 11
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (25795777..25799786)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (23844569..23848525)

Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4350910 Neighboring gene uncharacterized LOC136354255 Neighboring gene patatin-like protein 1 Neighboring gene patatin-like protein 3 Neighboring gene cyclin-dependent kinase inhibitor 3-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables monoacylglycerol lipase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phospholipase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
patatin-like protein 1
Names
Os11g0614400

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

    Range
    25795777..25799786
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015759971.3 → XP_015615457.1  patatin-like protein 1

    UniProtKB/TrEMBL
    A0A8J8YHW1, A2XC77, A3CBF8, Q0IRN4, Q2R189
    Conserved Domains (1) summary
    cd07214
    Location:29 → 381
    Pat17_isozyme_like; Patatin-like phospholipase of plants
Nucleotide Protein
Heading Accession and Version

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