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LOC4349968 DNA polymerase delta catalytic subunit-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4349968, updated on 6-Jun-2024

Summary

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Gene symbol
LOC4349968
Gene description
DNA polymerase delta catalytic subunit-like
Locus tag
OSNPB_110186400
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
POLD1; OspolD1
Expression
Ubiquitous expression in leaves before flowering (RPKM 14.6), flowers (RPKM 11.7) and 6 other tissues See more
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Genomic context

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See LOC4349968 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
30
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (4387460..4397803, complement)

Chromosome 11 - NC_029266.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9271058 Neighboring gene aldehyde dehydrogenase family 3 member H1 Neighboring gene probable methyltransferase PMT26 Neighboring gene probable indole-3-acetic acid-amido synthetase GH3.12 Neighboring gene probable anion transporter 6

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029266.1 Chromosome 11 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Characterization of DNA polymerase delta from a higher plant, rice (Oryza sativa L.). Uchiyama Y, et al. Gene, 2002 Jul 24. PMID 12242007

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3'-5'-DNA exonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-directed DNA polymerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA replication proofreading IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA-templated DNA replication IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in base-excision repair, gap-filling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nucleotide-excision repair, DNA gap filling IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of delta DNA polymerase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA polymerase delta catalytic subunit
Names
LOC_Os11g08330
OsPol delta large subunit
XP_015617044.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001423174.1 → NP_001410103.1  DNA polymerase delta catalytic subunit

    Status: VALIDATED

    Source sequence(s)
    AB037899, AP014967
    UniProtKB/Swiss-Prot
    A0A0N7KSJ4, Q2R9L5, Q53NH0, Q53P50, Q9LRE6
    UniProtKB/TrEMBL
    B8BJI4

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029266.1 Reference IRGSP-1.0 Primary Assembly

    Range
    4387460..4397803 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015761558.2 → XP_015617044.1  DNA polymerase delta catalytic subunit

    UniProtKB/Swiss-Prot
    Q9LRE6
    Conserved Domains (1) summary
    PTZ00166
    Location:77 → 1104
    PTZ00166; DNA polymerase delta catalytic subunit; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LRE6.1 GenPept UniProtKB/Swiss-Prot:Q9LRE6

Gene LinkOut

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Molecular Biology Databases
Research Materials