LOC4348644 protein indeterminate-domain 12 [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4348644
Gene description: protein indeterminate-domain 12
Locus tag: OSNPB_100419200
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: ID; ID1; Ehd2; OsID; RID1; GHD10; OsID1
Expression: Broad expression in flower buds (RPKM 5.6), milk grains (RPKM 2.8) and 4 other tissues See more
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Genomic context

Location:: chromosome: 10

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
RS_2024_06	current	ASM3414082v1 (GCF_034140825.1)	10	NC_089044.1 (15401308..15404886, complement)
102	previous assembly	IRGSP-1.0 (GCF_001433935.1)	10	NC_029265.1 (14739566..14743336, complement)

Chromosome 10 - NC_089044.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

OsCOL5 suppresses heading through modulation of Ghd7 and Ehd2, enhancing rice yield.
Title: OsCOL5 suppresses heading through modulation of Ghd7 and Ehd2, enhancing rice yield.
These results demonstrate that OsCOL15 is an important floral regulator acting upstream of Ghd7 and RID1 in the rice photoperiodic flowering-time regulatory network.
Title: The rice CONSTANS-like protein OsCOL15 suppresses flowering by promoting Ghd7 and repressing RID1.
Suppressor of rid1 (SID1) encodes an INDETERMINATE DOMAIN (IDD) transcription factor, and both SID1 and Rice Indeterminate 1 (RID1) directly target the promoter regions of florigen genes.
Title: Suppressor of rid1 (SID1) shares common targets with RID1 on florigen genes to initiate floral transition in rice.

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables DNA-binding transcription factor activity	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: protein EARLY HEADING DATE 2

Names: Cys2/His2-type zinc finger transcription factor; LOC_Os10g28330; OSNPB_100419200; Protein EARLY HEADING DATE 2; Protein RICE INDETERMINATE 1; early heading date 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001403972.1 → NP_001390901.1 protein EARLY HEADING DATE 2

Status: VALIDATED

Source sequence(s)

FJ009578

UniProtKB/Swiss-Prot

A3C4T1, B1B534, B8BGV5, Q7XEJ8

Conserved Domains (1) summary

sd00017
Location:192 → 211

ZF_C2H2; C2H2 Zn finger [structural motif]