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LOC4347715 synaptotagmin-2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4347715, updated on 21-Dec-2023

Summary

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Gene symbol
LOC4347715
Gene description
synaptotagmin-2
Locus tag
OSNPB_090538800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
B1274F11.3
Expression
Ubiquitous expression in roots before flowering (RPKM 55.4), flowers (RPKM 46.1) and 6 other tissues See more
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Genomic context

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See LOC4347715 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
15
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (21213337..21222931, complement)

Chromosome 9 - NC_029264.1Genomic Context describing neighboring genes Neighboring gene probable L-ascorbate peroxidase 4, peroxisomal Neighboring gene nitrate regulatory gene2 protein Neighboring gene uncharacterized LOC4347716 Neighboring gene predicted GPI-anchored protein 58 Neighboring gene 3-dehydroquinate synthase, chloroplastic Neighboring gene beta-galactosidase 12-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029264.1 Chromosome 9 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables lipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synaptotagmin-2
Names
Os09g0538800
P0229B10.34
putative CLB1 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029264.1 Reference IRGSP-1.0 Primary Assembly

    Range
    21213337..21222931 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026020286.1 → XP_025876071.1  synaptotagmin-2

    UniProtKB/TrEMBL
    A0A0N7KR68, A2Z3J5, Q651F3, Q69JE2
    Conserved Domains (2) summary
    COG5038
    Location:67 → 473
    COG5038; Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
    cl14603
    Location:419 → 536
    C2; C2 domain

  2. XM_015756696.2 → XP_015612182.1  synaptotagmin-2

    UniProtKB/TrEMBL
    A0A0N7KR68, A2Z3J5, Q651F3, Q69JE2
    Conserved Domains (2) summary
    COG5038
    Location:67 → 473
    COG5038; Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
    cl14603
    Location:419 → 536
    C2; C2 domain

  3. XM_026020287.1 → XP_025876072.1  synaptotagmin-2

    UniProtKB/TrEMBL
    A0A0N7KR68, A2Z3J5, Q651F3, Q69JE2
    Conserved Domains (2) summary
    COG5038
    Location:67 → 473
    COG5038; Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
    cl14603
    Location:419 → 536
    C2; C2 domain
Nucleotide Protein
Heading Accession and Version

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