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LOC4347556 uncharacterized LOC4347556 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4347556, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4347556
Gene description
uncharacterized LOC4347556
Locus tag
OSNPB_090513200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
P0450E05.7
Expression
Broad expression in roots before flowering (RPKM 13.2), flower buds (RPKM 3.1) and 5 other tissues See more
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Genomic context

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Location:
chromosome: 9
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (24382344..24386613, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (19971109..19975257, complement)

Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene ankyrin repeat domain-containing protein 2B Neighboring gene phospholipase A(1) LCAT3 Neighboring gene vignain-like Neighboring gene uncharacterized LOC4347557 Neighboring gene protein FLOWERING LOCUS T

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4347556
Names
Os09g0513200
anthocyanin-related membrane protein 1 (Anm1)-like
solute carrier family 35 member F1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

    Range
    24382344..24386613 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015755253.3 → XP_015610739.1  uncharacterized protein LOC4347556

    UniProtKB/TrEMBL
    A0A0P0XP05, Q69IN6
    Conserved Domains (1) summary
    pfam06027
    Location:9 → 299
    SLC35F; Solute carrier family 35
Nucleotide Protein
Heading Accession and Version

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