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LOC4345682 poly(A)-specific ribonuclease PARN-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4345682, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4345682
Gene description
poly(A)-specific ribonuclease PARN-like
Locus tag
OSNPB_080440200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flower buds (RPKM 5.2), flowers (RPKM 3.9) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 8
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (21548928..21555651)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (21410543..21417267)

Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene Golgi SNAP receptor complex member 1-1 Neighboring gene temperature-induced lipocalin-1 Neighboring gene probable CCR4-associated factor 1 homolog 7 Neighboring gene stromal cell-derived factor 2-like protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3'-5'-RNA exonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
poly(A)-specific ribonuclease PARN-like
Names
Os08g0440200

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

    Range
    21548928..21555651
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015792763.3 → XP_015648249.1  poly(A)-specific ribonuclease PARN-like

    UniProtKB/TrEMBL
    B8BB29, B9G150
    Conserved Domains (1) summary
    pfam04857
    Location:16 → 396
    CAF1; CAF1 family ribonuclease
Nucleotide Protein
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