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LOC4344541 succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4344541, updated on 6-Jun-2024

Summary

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Gene symbol
LOC4344541
Gene description
succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial-like
Locus tag
OSNPB_080120000
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
Ip; sdhB; rps14; SDH2-1; OJ1005_B05.29-1; OJ1005_B05.29-2
Expression
Broad expression in flower buds (RPKM 82.7), flowers (RPKM 81.1) and 6 other tissues See more
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Genomic context

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See LOC4344541 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
4
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (1091207..1094685, complement)

Chromosome 8 - NC_029263.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein CO3-like Neighboring gene photosystem II core complex proteins psbY, chloroplastic Neighboring gene protein STICHEL-like 2 Neighboring gene uncharacterized LOC4344544

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029263.1 Chromosome 8 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. A single nuclear transcript encoding mitochondrial RPS14 and SDHB of rice is processed by alternative splicing: common use of the same mitochondrial targeting signal for different proteins. Kubo N, et al. Proc Natl Acad Sci U S A, 1999 Aug 3. PMID 10430921, Free PMC Article
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 2 iron, 2 sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables electron transfer activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in aerobic respiration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in respiratory electron transport chain IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tricarboxylic acid cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial
Names
Iron-sulfur subunit of complex II
LOC_Os08g02640
mitochondrial ribosomal portein S14
mitochondrial ribosomal protein S14
succinate dehydrogenase iron-protein subunit (SDHB)
XP_015650210.1
XP_015650211.1
XP_015650213.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001403367.1 → NP_001390296.1  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial isoform 1

    Status: VALIDATED

    Source sequence(s)
    AK059789, BT130534, CI289148
    UniProtKB/TrEMBL
    A2YQQ8, A3BP48, Q6ZJ38, Q9S7D3

  2. NM_001403368.1 → NP_001390297.1  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial isoform 2

    Status: VALIDATED

    Source sequence(s)
    AK104303, CI288463
    UniProtKB/Swiss-Prot
    A0A0N7KP69, Q9S827

  3. NM_001403369.1 → NP_001390298.1  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial isoform 2

    Status: VALIDATED

    Source sequence(s)
    AK059815
    UniProtKB/Swiss-Prot
    A0A0N7KP69, Q9S827

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029263.1 Reference IRGSP-1.0 Primary Assembly

    Range
    1091207..1094685 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015794727.1 → XP_015650213.1  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial isoform X2

    UniProtKB/Swiss-Prot
    A0A0N7KP69, Q9S827
    Conserved Domains (1) summary
    PLN00129
    Location:3 → 281
    PLN00129; succinate dehydrogenase [ubiquinone] iron-sulfur subunit

  2. XM_015794725.1 → XP_015650211.1  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial isoform X2

    UniProtKB/Swiss-Prot
    Q9S827
    Conserved Domains (1) summary
    PLN00129
    Location:3 → 281
    PLN00129; succinate dehydrogenase [ubiquinone] iron-sulfur subunit

  3. XM_015794724.1 → XP_015650210.1  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial isoform X1

    UniProtKB/TrEMBL
    Q9S7D3
    Conserved Domains (2) summary
    PRK08881
    Location:259 → 350
    rpsN; 30S ribosomal protein S14; Reviewed
    PLN00129
    Location:3 → 225
    PLN00129; succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9S827.1 GenPept UniProtKB/Swiss-Prot:Q9S827

Gene LinkOut

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