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LOC4342563 60S ribosomal protein L4-1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4342563, updated on 21-Dec-2023

Summary

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Gene symbol
LOC4342563
Gene description
60S ribosomal protein L4-1
Locus tag
OSNPB_070180900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1014_E09.28
Expression
Ubiquitous expression in flower buds (RPKM 216.6), flowers (RPKM 133.4) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 7
Exon count:
2
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (4263168..4265662)

Chromosome 7 - NC_029262.1Genomic Context describing neighboring genes Neighboring gene protein ZINC INDUCED FACILITATOR-LIKE 1-like Neighboring gene heterogeneous nuclear ribonucleoprotein Q Neighboring gene pyruvate kinase isozyme A, chloroplastic Neighboring gene S-type anion channel SLAH2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029262.1 Chromosome 7 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytosolic large ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
60S ribosomal protein L4-1
Names
Os07g0180900
putative 60S ribosomal protein L4/L1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029262.1 Reference IRGSP-1.0 Primary Assembly

    Range
    4263168..4265662
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015791525.2 → XP_015647011.1  60S ribosomal protein L4-1

    UniProtKB/TrEMBL
    A0A0P0X2W1, A0A8J8XHR7, A2YIS2, A3BH67, Q6ZLB8
    Conserved Domains (1) summary
    PLN00185
    Location:1 → 405
    PLN00185; 60S ribosomal protein L4-1; Provisional
Nucleotide Protein
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