U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC4339844 homogentisate 1,2-dioxygenase-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4339844, updated on 6-Jun-2024

Summary

Go to the top of the page Help
Gene symbol
LOC4339844
Gene description
homogentisate 1,2-dioxygenase-like
Locus tag
OSNPB_060103300
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
HGO; OsJ_19811
Expression
Ubiquitous expression in leaves before flowering (RPKM 25.1), mature seeds (RPKM 22.4) and 6 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC4339844 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
9
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (215106..218288, complement)

Chromosome 6 - NC_029261.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein CONSTANS-LIKE 10 Neighboring gene uncharacterized acetyltransferase At3g50280 Neighboring gene uncharacterized LOC112939295 Neighboring gene uncharacterized protein At4g28440 Neighboring gene peroxisomal acyl-coenzyme A oxidase 1

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_029261.1 Chromosome 6 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

Pathways from PubChem

Go to the top of the page

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables homogentisate 1,2-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in L-phenylalanine catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tyrosine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
homogentisate 1,2-dioxygenase
Names
Homogentisate oxygenase
Homogentisic acid oxidase
Homogentisicase
LOC_Os06g01360
OSJNBa0075G19.26
putative homogentisate 1,2-dioxygenase
XP_015643392.1
XP_015643393.1
XP_025881959.1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001420978.1 → NP_001407907.1  homogentisate 1,2-dioxygenase

    Status: VALIDATED

    Source sequence(s)
    AK062144, CB642064, CB651956, CI128207, CI564084, CI569791
    UniProtKB/Swiss-Prot
    A0A0P0WRA6, Q0DFB9, Q5VRH4
    UniProtKB/TrEMBL
    B8B197

RNA

  1. NR_185224.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK062144, CB642064, CB651956, CB667256, CI128207, CI569791

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029261.1 Reference IRGSP-1.0 Primary Assembly

    Range
    215106..218288 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026026174.1 → XP_025881959.1  homogentisate 1,2-dioxygenase isoform X3

    UniProtKB/TrEMBL
    B8B197
    Conserved Domains (1) summary
    PLN02658
    Location:24 → 411
    PLN02658; homogentisate 1,2-dioxygenase

  2. XM_015787906.2 → XP_015643392.1  homogentisate 1,2-dioxygenase isoform X1

    UniProtKB/TrEMBL
    B8B197
    Conserved Domains (1) summary
    PLN02658
    Location:24 → 493
    PLN02658; homogentisate 1,2-dioxygenase

  3. XM_015787907.2 → XP_015643393.1  homogentisate 1,2-dioxygenase isoform X2

    UniProtKB/Swiss-Prot
    Q5VRH4
    Conserved Domains (1) summary
    PLN02658
    Location:24 → 461
    PLN02658; homogentisate 1,2-dioxygenase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5VRH4.1 GenPept UniProtKB/Swiss-Prot:Q5VRH4

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials